- Basic information
- CohesinDB ID: CDBP00420318
- Locus: chr21-42346561-42348316
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Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE50893
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Cell type: RPE, Fibroblast, HCT-116, K-562, GM19239, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 59%,
"14_ReprPCWk": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, HMG20A, FOXA1, SUZ12, MLL4, ZFHX2, TFAP4, HDGF, ATF3, ZBTB5, RUNX3, CBFB, MITF, ZNF320, CDX2, ZNF506, KLF5, TEAD1, TRIM28, KLF6, ETV1, ESR1, HNF1B, OCA2, TP73, USF2, CTCF, JUN, TCF12, BAF155, LMO1, GATA6, TFAP2C, GLIS1, POU2F2, MYCN, ZNF263, POU5F1, TOP2A, ID3, ZBTB48, STAT1, ERG, HOXC5, OGG1, NFKB2, MYC, EZH1, SMARCA4, RAD21, GRHL3, PROX1, GABPA, STAT3, ZNF614, XRCC5, PRDM14, IKZF1, DNMT3B, NR2F6, ZNF750, CEBPB, NR3C1, ESRRA, HNRNPL, CREB1, EZH2, BMPR1A, GABPB1, SPI1, IRF1, ZNF257, GATA2, FLI1, HCFC1R1, NCOA2, RUNX1, BCL6, SMC1A, EZH2phosphoT487, SOX13, ZFX, SMAD3, TET2, ERG3, CREBBP, RUNX2, GATA4, ARNT, DAXX, PBX4, ZNF48, HMBOX1, SMAD4, CHD1, FOS, ZEB1, TEAD3, KDM6B, MYB, NCOA1, SREBF2, BCL11A, TFAP2A, HNF4A, REST, ZBTB7A, ZNF479, CTBP2, AATF, SMC3, STAG1, TRP47, CBFA2T2, MEF2B, PPARG, FOXA2, TBL1X, EBF1, WT1, ESR2, CDK9, ZNF580, YY1, RELA, MCM3, SP140, ZIC2, HIF1A, GATA3, TAL1, MAF1, MAX, NRIP1, GATA1, ZNF143, SPIB, CBX2, PLAG1, KLF4, ZFP69B, NCOA3, NR2F1, KDM5B, TP53, ZNF334, NFKB1, EGR2, ELF3, AR, PAX3-FOXO1, RXR, HSF1, ZBTB26, BRD4, MAZ, BRCA1, AHR
- Target gene symbol (double-evidenced CRMs): UBASH3A,TFF2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 59
- Number of somatic mutations (non-coding): 0
- Related genes and loops