- Basic information
- CohesinDB ID: CDBP00420321
- Locus: chr21-42358219-42359271
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 41%,
"14_ReprPCWk": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOXA1, HLF, RXRB, KDM3A, ZBTB7B, HDGF, MEN1, MORC2, PAX5, TEAD1, LMO2, OCA2, SOX5, E2F4, DEK, ZNF528, NR5A2, GATAD2A, NANOG, POU5F1, ZNF263, TOP2A, HHEX, CTBP1, STAT1, SAP130, ERG, SMARCA4, RFX1, RCOR1, NR2F6, CEBPB, CREB1, GABPB1, ZHX2, MIXL1, KLF17, GATA2, ZNF644, MXD3, SIX2, FLI1, HCFC1, DRAP1, RUNX1, CEBPA, NKX2-2, HDAC1, TET2, SP5, TRIM22, SMARCC1, PRDM10, ZBTB2, ZXDC, SOX11, TFDP1, ATF2, FOXM1, SP2, SMARCB1, PML, PIAS1, SMAD1, NR1H2, C11orf30, MBD1, IKZF5, RBM25, MBD2, ETV4, CBFA2T2, CBX3, ZNF207, CREM, CHD2, NFATC1, WT1, NEUROD1, JUNB, MCM3, ZFP36, BATF, PLAG1, KLF4, ELF3, ARID4B, RXR, EGLN2, ZNF366, ZBTB26, HSF1, NCOR1, ZNF316, FOSL1, XBP1, PBX2, ATF3, THRB, RUNX3, WDHD1, ZNF467, JMJD1C, ELF1, RBM39, CTCF, JUN, MNT, RYBP, DPF2, IRF4, MED12, DDX20, PDX1, TFAP2C, RBPJ, MLX, MTA2, ZBTB17, ZBTB48, SRF, DDX5, HOMEZ, RXRA, NKX3-1, MIER3, LEF1, VDR, NR3C1, ESRRA, GRHL2, SMARCA5, NFIL3, CC2D1A, THAP11, EZH2phosphoT487, SOX13, ZNF770, ZNF18, CEBPZ, ARNT, NFIB, DAXX, ZNF48, ZEB2, NFYA, HMBOX1, PBX3, MAFB, HMGXB4, TEAD3, DIDO1, U2AF1, KLF9, USF1, BCL11A, TFAP2A, SP1, ATF7, ASH2L, CTBP2, SMC3, STAG1, TRP47, MTA3, EBF1, MAFF, ESR2, ZNF580, ZKSCAN1, BCL3, KDM1A, BRG1, ZIC2, GATA3, TAL1, NRIP1, ZNF143, MTA1, CBX2, ZNF141, TP53, ZNF334, BRD2, KAT8, RB1, RNF2, IKZF2, BRD4, JUND, CUX1, ZNF468, CBX5, PGR, PATZ1, UBTF, TFAP4, BMI1, ZNF444, ATF4, MXD4, SMARCE1, KLF6, NFE2L2, ZNF217, ESR1, TP73, SOX4, TRIM24, RFX5, GTF2F1, GLIS1, POU2F2, ZSCAN5D, ZSCAN5A, TBP, HOXC5, OGG1, SMARCC2, MYC, ARID1B, NKX2-1, GABPA, STAT3, IKZF1, DNMT3B, EZH2, SPI1, HDAC2, GATAD2B, NFYB, NCOA2, ETV5, BCL6, SIN3A, RARA, NFYC, CREBBP, ZNF384, SMAD4, ZNF518A, CBFA2T3, CDK8, ZEB1, ZMYM3, NCOA1, MAFK, HNF4A, REST, ARID1A, ZHX1, HNRNPLL, BCOR, FOXP1, AATF, PPARG, TBL1X, ZNF662, ZNF574, TCF7, RELA, TARDBP, SKIL, MAX, ZNF592, GFI1B, TCF7L2, NR2F1, KDM5B, PKNOX1, MYOD1, AR, ZNF324, HEXIM1, ZNF280D, AHR, FOSL2, MBD3, HMG20A, MEIS2, SUZ12, ZNF28, NFIC, KLF14, MECOM, HDAC3, CDX2, ZNF506, KLF5, TRIM28, BCLAF1, ETV1, RCOR2, HNF1B, MLL, USF2, TCF12, BAF155, EP300, GATA6, RAD51, ZNF512B, E2F1, SMC1, TEAD4, FOXA3, ZNF175, EED, ZNF425, CHD8, BRD1, MYCN, SRC, RUNX1T1, ID3, GATAD1, ARID3A, ASCL1, ZNF341, RAD21, GRHL3, XRCC5, ZNF614, NFE2, ZNF639, TRPS1, TFE3, ZSCAN2, IRF1, SREBF1, ZGPAT, MRTFB, ATF1, PTBP1, CBX1, SMC1A, SIRT6, ZFX, ZNF534, SMAD3, NOTCH1, RUNX2, CDK6, GATA4, PBX4, FOS, CHD1, MED1, CEBPD, MYB, ZNF3, SETDB1, NIPBL, ZBTB7A, POU2F3, TCF3, FOXA2, MIER2, ZBED1, ZBTB33, CDK9, HOXB13, YY1, ZNF148, BRCA1, SP140, HIF1A, OTX2, GATA1, TLE3, CEBPG, NCOA3, NR2F2, ZNF512, ZNF687, NFKBIZ, BHLHE40, TAF1, ZNF579, CLOCK, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): TFF1
- Function elements
- Human SNPs: Pancreatic_cancer
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 14
- Related genes and loops