- Basic information
- CohesinDB ID: CDBP00420351
- Locus: chr21-42455140-42456124
-
Data sourse: GSE93080, ENCSR000EAC, GSE67783, GSE72082, GSE86191, GSE116344, GSE111913, GSE50893, ENCSR000BMY, ENCSR000EDE, GSE68388, GSE83726, ENCSR703TNG, GSE25021, GSE108869
-
Cell type: MCF-7, GM12892, GM18526, HCT-116, RH4, SNYDER, GM12878, GM12891, GM2588, GM12890, HeLa-S3, HuCC-T1, RT-112, HSPC, GM18486
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 7% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.833
- Subunit: SA1,Rad21,SA2,SMC1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 36%,
"14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PGR, ZNF660, XBP1, FOXA1, TFAP4, LYL1, ATF3, CHD7, CBFB, TP63, ZNF736, JMJD1C, MAF, ELF1, TRIM28, TEAD1, RBM39, ETV1, LMO2, ESR1, ZNF561, CTCF, TCF12, JUN, LMO1, DEK, TFAP2C, EED, GLIS1, MYCN, ZNF263, POU5F1, ID3, KDM4C, ZBTB48, ZSCAN5A, STAT1, DUX4, SRF, ZNF134, ZNF485, ERG, PBX1, ETS1, MYC, SMARCA4, RAD21, GRHL3, GABPA, STAT3, XRCC5, IKZF1, NFE2, DNMT3B, NR3C1, ESRRA, ZNF750, CEBPB, KMT2A, CREB1, BMPR1A, FEZF1, EBF3, SPI1, KLF17, ZNF257, GATA2, FLI1, HCFC1R1, PTBP1, RUNX1, SMC1A, MAFG, CEBPA, NKX2-2, ZNF335, ZFX, ZFP3, TET2, ERG3, ZNF770, SMARCC1, RARA, ZNF35, NOTCH1, ZBTB2, ARNT, SOX11, ATF2, SMAD4, FOXM1, ZNF10, CHD1, FOS, SMARCB1, CDK8, MED1, TEAD3, DIDO1, MYB, C11orf30, EVI1, SREBF2, MAFK, BCL11A, NR4A1, REST, RBM25, ATF7, PHIP, TCF3, PRDM6, AATF, SMC3, STAG1, TRP47, CBFA2T2, PPARG, EBF1, SS18, ZSCAN16, WT1, MAFF, ZBTB33, ZKSCAN1, KDM1A, YY1, RELA, NEUROD1, AHR, BRG1, SP140, ZFP36, ZIC2, TCF4, TAL1, MAX, ZNF143, PLAG1, BCL11B, NR2F2, NEUROG2, NR2F1, ZNF334, NFKB1, MYOD1, AR, RXR, HSF1, BRD4, JUND, MAZ, ZNF316
- Target gene symbol (double-evidenced CRMs): ABCG1,UMODL1,SLC37A1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
ENSG00000177398,
ENSG00000160179,
ENSG00000160190,
- Related loop:
chr21:41600000-41625000~~chr21:42450000-42475000,
chr21:41973241-41974866~~chr21:42448856-42450964,
chr21:42116713-42118377~~chr21:42449324-42450723,
chr21:42125000-42150000~~chr21:42450000-42475000,
chr21:42144186-42146844~~chr21:42448861-42450956,
chr21:42144211-42146835~~chr21:42449010-42450957,
chr21:42144376-42146867~~chr21:42448889-42450963,
chr21:42144411-42146838~~chr21:42448763-42451324,
chr21:42144415-42146862~~chr21:42448353-42451045,
chr21:42144416-42146844~~chr21:42449061-42450957,
chr21:42144446-42146688~~chr21:42448842-42450940,
chr21:42144457-42146811~~chr21:42448861-42450972,
chr21:42144464-42146853~~chr21:42448862-42450942,
chr21:42144666-42146603~~chr21:42449091-42451494,
chr21:42144672-42146558~~chr21:42449337-42450741,
chr21:42144679-42146840~~chr21:42448762-42450961,
chr21:42144691-42147023~~chr21:42448752-42450926,
chr21:42144735-42146659~~chr21:42448856-42450964,
chr21:42144746-42146589~~chr21:42449078-42451430,
chr21:42144760-42146774~~chr21:42448885-42450942,
chr21:42144768-42146845~~chr21:42448789-42450976,
chr21:42144769-42146888~~chr21:42448845-42450957,
chr21:42144776-42146791~~chr21:42448814-42450934,
chr21:42144797-42146760~~chr21:42449311-42450852,
chr21:42144929-42146574~~chr21:42449093-42451498,
chr21:42144930-42146490~~chr21:42449278-42451482,
chr21:42150000-42175000~~chr21:42450000-42475000,
chr21:42162848-42165688~~chr21:42448752-42450926,
chr21:42163341-42165646~~chr21:42448763-42451324,
chr21:42163482-42166809~~chr21:42448782-42450960,
chr21:42163513-42165594~~chr21:42448889-42450963,
chr21:42163547-42165689~~chr21:42448762-42450961,
chr21:42163548-42165686~~chr21:42449010-42450957,
chr21:42163560-42165678~~chr21:42448353-42451045,
chr21:42163598-42165460~~chr21:42448798-42450961,
chr21:42163609-42165687~~chr21:42448814-42450934,
chr21:42163649-42165427~~chr21:42448856-42450964,
chr21:42163748-42165476~~chr21:42449061-42450957,
chr21:42163825-42165673~~chr21:42448823-42451382,
chr21:42300000-42325000~~chr21:42450000-42475000,
chr21:42308172-42310860~~chr21:42448781-42450921,
chr21:42308252-42310733~~chr21:42448842-42450940,
chr21:42308310-42311045~~chr21:42448762-42450961,
chr21:42308397-42310724~~chr21:42448789-42450976,
chr21:42308397-42310785~~chr21:42448830-42450945,
chr21:42308432-42311039~~chr21:42449093-42451498,
chr21:42308453-42310909~~chr21:42449091-42451494,
chr21:42308479-42311031~~chr21:42449017-42451480,
chr21:42308480-42310797~~chr21:42448856-42450964,
chr21:42308481-42310631~~chr21:42449278-42451482,
chr21:42308486-42310572~~chr21:42449084-42450924,
chr21:42308486-42310865~~chr21:42449186-42451455,
chr21:42308487-42310582~~chr21:42449197-42451403,
chr21:42308495-42311005~~chr21:42448763-42451324,
chr21:42308500-42310766~~chr21:42449031-42450943,
chr21:42308507-42310972~~chr21:42448353-42451045,
chr21:42308516-42310935~~chr21:42448798-42450961,
chr21:42308523-42310989~~chr21:42448845-42450957,
chr21:42308774-42311038~~chr21:42449078-42451430,
chr21:42308780-42311001~~chr21:42448912-42450945,
chr21:42308939-42310932~~chr21:42449010-42450957,
chr21:42308968-42310990~~chr21:42448814-42450934,
chr21:42308984-42310739~~chr21:42449210-42450917,
chr21:42309011-42310797~~chr21:42448842-42450946,
chr21:42309167-42310554~~chr21:42449161-42450786,
chr21:42336547-42339124~~chr21:42448845-42450957,
chr21:42336747-42338965~~chr21:42448842-42450946,
chr21:42336807-42338774~~chr21:42449322-42450806,
chr21:42336819-42339025~~chr21:42448763-42451324,
chr21:42336829-42338858~~chr21:42448798-42450961,
chr21:42336832-42339100~~chr21:42448762-42450961,
chr21:42336860-42338813~~chr21:42449084-42450924,
chr21:42336860-42339221~~chr21:42448814-42450934,
chr21:42336947-42338996~~chr21:42449010-42450957,
chr21:42337150-42338850~~chr21:42449091-42451494,
chr21:42337183-42339009~~chr21:42448752-42450926,
chr21:42337200-42339002~~chr21:42448353-42451045,
chr21:42337222-42338891~~chr21:42449125-42450914,
chr21:42359657-42361508~~chr21:42448798-42450961,
chr21:42359709-42361461~~chr21:42448781-42450921,
chr21:42359717-42361558~~chr21:42448842-42450946,
chr21:42359923-42361354~~chr21:42449161-42450786,
chr21:42376023-42377763~~chr21:42448830-42450945,
chr21:42376040-42377995~~chr21:42448845-42450957,
chr21:42376051-42377691~~chr21:42448842-42450946,
chr21:42376058-42377983~~chr21:42448798-42450961,
chr21:42376165-42377700~~chr21:42449311-42450852,
chr21:42376176-42377607~~chr21:42449161-42450786,
chr21:42376206-42377802~~chr21:42449017-42451480,
chr21:42376251-42377642~~chr21:42449010-42450957,
chr21:42376319-42377570~~chr21:42449201-42450804,
chr21:42379115-42382711~~chr21:42448763-42451324,
chr21:42380286-42382659~~chr21:42448861-42450972,
chr21:42380494-42382722~~chr21:42448782-42450960,
chr21:42380497-42382547~~chr21:42448828-42450945,
chr21:42380717-42382804~~chr21:42449093-42451498,
chr21:42380746-42382516~~chr21:42449031-42450943,
chr21:42380793-42382292~~chr21:42449091-42451494,
chr21:42380842-42382336~~chr21:42449125-42450914,
chr21:42380859-42382357~~chr21:42448814-42450934,
chr21:42380883-42382301~~chr21:42449239-42450901,
chr21:42380903-42382335~~chr21:42449017-42451480,
chr21:42450000-42475000~~chr21:42550000-42575000,
chr21:42454707-42456121~~chr21:42535463-42538505,
chr21:42454756-42455941~~chr21:42536154-42538496,