- Basic information
- CohesinDB ID: CDBP00420354
- Locus: chr21-42459111-42459310
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Data sourse: ENCSR879KXD, GSE73207
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Cell type: K-562, TF-1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 45%,
"5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GATA6
- Target gene symbol (double-evidenced CRMs): ABCG1,SLC37A1,UMODL1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000177398,
ENSG00000160179,
ENSG00000160190,
- Related loop:
chr21:41600000-41625000~~chr21:42450000-42475000,
chr21:42125000-42150000~~chr21:42450000-42475000,
chr21:42150000-42175000~~chr21:42450000-42475000,
chr21:42300000-42325000~~chr21:42450000-42475000,
chr21:42450000-42475000~~chr21:42550000-42575000,
chr21:42454707-42456121~~chr21:42535463-42538505,
chr21:42454756-42455941~~chr21:42536154-42538496,