- Basic information
- CohesinDB ID: CDBP00420363
- Locus: chr21-42473712-42475050
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Data sourse: GSE206145-GSE177045, ENCSR230ZWH, GSE72082, ENCSR000BSB, ENCSR000BLY, GSE105028, GSE103477, GSE131606, GSE108869, GSE25021, ENCSR917QNE, ENCSR000BTU, GSE93080, ENCSR000DZP, ENCSR000EAC, GSE67783, GSE86191, GSE138405, ENCSR703TNG, GSE94872, ENCSR000BLS, GSE85526, ENCSR000BMY, ENCSR000EHX, GSE97394, ENCSR000BTQ, ENCSR853VWZ, GSE129526, GSE111913, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE126990, GSE50893, ENCSR000ECS
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Cell type: GM2610, GM19240, Liver, HuCC-T1, H9-hESC, HEKn, Ishikawa, HeLa-S3, GM2255, K-562, GM18486, DKO, SNYDER, GM12878, GM2588, SK-N-SH, GM19239, RT-112, THP-1, GM19099, HUES64, MCF-7, GM12892, Hela-Kyoto, HCT-116, Hep-G2, A-549, HUVEC, GM19238, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 15% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.667
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
88% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 32%,
"7_Enh": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, PGR, HMG20A, ZNF660, HMGN3, HNF1A, XBP1, PATZ1, FOXA1, SUZ12, RXRB, OGG1, MLL4, ZFHX2, TFAP4, HDGF, THRB, ZC3H8, ATF3, ZFP64, CHD7, PRDM1, RUNX3, ZNF444, KLF14, MXD4, ZNF189, PAX5, TP63, ZNF736, CDX2, ZNF467, KLF5, ELF1, TEAD1, BCLAF1, KLF6, ETV1, LMO2, ESR1, USF2, CTCF, TCF12, JUN, BAF155, EP300, SOX9, GATA6, SOX5, DPF2, DMAP1, TRIM24, RFX5, DEK, E2F4, RAD51, SMC1, TEAD4, FOXA3, ZNF175, GATAD2A, GTF2F1, RBPJ, TFAP2C, EED, GLIS1, PDX1, NANOG, POU2F2, POU5F1, MYCN, ZNF263, KDM4C, ID3, CTBP1, MTA2, ZBTB17, ZBTB48, ZSCAN5A, ZSCAN21, STAT1, ZBTB1, SRF, GATAD1, SAP130, NBN, ERG2, SP4, ARID3A, DDX5, HNF4G, HOXC5, ERG, ZNF597, SMARCC2, ETS1, MYC, ZNF341, NFKB2, KDM4A, RFX1, HOMEZ, RAD21, GRHL3, RXRA, PROX1, NKX2-1, GABPA, APC, XRCC5, STAT3, NKX3-1, ZNF398, IKZF1, MIER3, RCOR1, NR2F6, CREM, VDR, PRDM14, NR3C1, CEBPB, ESRRA, DNMT3B, CREB1, ZBTB11, TBL1XR1, EZH2, BMPR1A, GRHL2, ZNF652, EBF3, GABPB1, ZHX2, SPI1, EHF, IRF1, KLF17, HDAC2, GATA2, ZNF644, GATAD2B, MXD3, FLI1, HCFC1, ZGPAT, MXI1, RELB, NFIL3, MRTFB, NCOA2, ZIM3, ETV5, RUNX1, THAP11, CTNNB1, MAFG, BCL6, CBX1, CEBPA, NKX2-2, SMC1A, SOX13, SIN3A, AFF4, ZNF534, ZFX, SMAD3, ZNF770, TET2, ERG3, SP5, TRIM22, SMARCC1, PRDM10, RARA, PRPF4, CREBBP, ZNF35, ZBTB2, ZNF384, RUNX2, CDK6, GATA4, ZNF184, GR, SP3, ARNT, DAXX, PBX4, CBX3, NRF1, ZNF48, PRDM9, SMAD4, SP2, SMARCB1, CDK8, HMGXB4, FOS, CHD1, MED1, ZEB1, TEAD3, SPDEF, TERF1, KDM6B, PIAS1, NR1H2, C11orf30, MAFK, NIPBL, SP1, BCL11A, HNF4A, ARID1A, ZBTB7A, ZHX1, ATF7, ASH2L, HNRNPLL, PHIP, TCF3, FOXP1, BCOR, AATF, SMC3, NCOR2, STAG1, MLLT1, ETV4, NFATC3, SKI, AGO1, TRP47, CBFA2T2, MEF2B, PPARG, TBL1X, ZNF207, FOXA2, CHD2, SS18, PAF1, MIER2, ZNF600, ZNF692, MAFF, WT1, EBF1, E2F8, ZNF574, ZNF580, ZKSCAN1, BCL3, KDM1A, YY1, RELA, TARDBP, JUNB, AHR, BRG1, MCM3, SP140, ZIC2, TCF4, HIF1A, PCGF1, SKIL, GATA3, BATF, TAL1, MAX, NRIP1, ZNF143, HAND2, PLAG1, KLF4, CEBPG, SP7, NCOA3, NR2F2, ZNF281, NR2F1, TCF7L2, KDM5B, TP53, PKNOX1, ZNF687, ZNF334, NFKB1, ZSCAN22, EGR2, ELF3, BRD2, KAT8, T, TBX21, ARID4B, AR, BHLHE40, RXR, EGLN2, ZBTB42, HEXIM1, RB1, EGR1, HSF1, ZBTB26, NCOR1, BRD4, JUND, IKZF2, CLOCK, MAZ, BRCA1, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): ABCG1,RSPH1,C2CD2,SLC37A1,PRDM15,UMODL1,BACE2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000141956,
ENSG00000157617,
ENSG00000177398,
ENSG00000160179,
ENSG00000160188,
ENSG00000160190,
- Related loop:
chr21:41200000-41225000~~chr21:42475000-42500000,
chr21:41600000-41625000~~chr21:42450000-42475000,
chr21:41650000-41675000~~chr21:42475000-42500000,
chr21:41700000-41725000~~chr21:42475000-42500000,
chr21:41800000-41825000~~chr21:42475000-42500000,
chr21:41900000-41925000~~chr21:42475000-42500000,
chr21:41950000-41975000~~chr21:42475000-42500000,
chr21:42125000-42150000~~chr21:42450000-42475000,
chr21:42125000-42150000~~chr21:42475000-42500000,
chr21:42150000-42175000~~chr21:42450000-42475000,
chr21:42300000-42325000~~chr21:42450000-42475000,
chr21:42450000-42475000~~chr21:42550000-42575000,
chr21:42466752-42469410~~chr21:42536796-42538220,
chr21:42473977-42475276~~chr21:42512630-42515252,
chr21:42475000-42500000~~chr21:42575000-42600000,
chr21:42475000-42500000~~chr21:43250000-43275000,
chr21:42475000-42500000~~chr21:43300000-43325000,