- Basic information
- CohesinDB ID: CDBP00420373
- Locus: chr21-42501424-42501674
-
Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT
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Cell type: K-562, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 65%,
"14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): SLC37A1,UBASH3A,PRDM15,ABCG1,TMPRSS3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
ENSG00000141956,
ENSG00000160179,
ENSG00000160183,
ENSG00000160185,
ENSG00000160190,
- Related loop:
chr21:41200000-41225000~~chr21:42475000-42500000,
chr21:41650000-41675000~~chr21:42475000-42500000,
chr21:41700000-41725000~~chr21:42475000-42500000,
chr21:41800000-41825000~~chr21:42475000-42500000,
chr21:41800000-41825000~~chr21:42500000-42525000,
chr21:41900000-41925000~~chr21:42475000-42500000,
chr21:41950000-41975000~~chr21:42475000-42500000,
chr21:42125000-42150000~~chr21:42475000-42500000,
chr21:42300000-42325000~~chr21:42500000-42525000,
chr21:42400000-42425000~~chr21:42500000-42525000,
chr21:42475000-42500000~~chr21:42575000-42600000,
chr21:42475000-42500000~~chr21:43250000-43275000,
chr21:42475000-42500000~~chr21:43300000-43325000,