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Basic information

CohesinDB ID: CDBP00420405

Locus: chr21-42576721-42576991

Data sourse: GSE62063

Cell type: Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: NIPBL

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 86% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 41%, "9_Het": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, CBX5, CBX3, SS18, ZSCAN21, MPHOSPH8, KDM1A, TARDBP, SMARCA4, ZNF429, RCOR1, TRIM28, ZMYM3, NCOR2, SETDB1, JUN, SPI1, PRDM4, RBM25, ZNF280D, SMARCA5, SMC1, ZNF280A, ZFP82

Target gene symbol (double-evidenced CRMs): ABCG1,U2AF1,PKNOX1,SLC37A1,PDE9A,HSF2BP,RSPH1,UMODL1,WDR4

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000177398, ENSG00000160179, ENSG00000160188, ENSG00000160190, ENSG00000160191, ENSG00000160193, ENSG00000160199, ENSG00000160201, ENSG00000160207,

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Deatailed information for cohesin site CDBP00420405