- Basic information
- CohesinDB ID: CDBP00420413
- Locus: chr21-42601201-42601742
-
Data sourse: GSE206145, GSE206145-NatGen2015, GSE67783
-
Cell type: RPE, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 52%,
"14_ReprPCWk": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ASCL1, OGG1, SCRT2, ZFX, WT1, SCRT1, MAX, USF1
- Target gene symbol (double-evidenced CRMs): CBS,PDE9A,RRP1B,PKNOX1,HSF2BP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000160191,
ENSG00000160199,
ENSG00000160200,
ENSG00000160207,
ENSG00000160208,
- Related loop:
chr21:42125000-42150000~~chr21:42575000-42600000,
chr21:42150000-42175000~~chr21:42575000-42600000,
chr21:42300000-42325000~~chr21:42575000-42600000,
chr21:42475000-42500000~~chr21:42575000-42600000,
chr21:42575000-42600000~~chr21:42675000-42700000,
chr21:42575000-42600000~~chr21:42700000-42725000,
chr21:42575000-42600000~~chr21:42725000-42750000,
chr21:42575000-42600000~~chr21:42750000-42775000,
chr21:42575000-42600000~~chr21:42775000-42800000,
chr21:42575000-42600000~~chr21:42800000-42825000,
chr21:42575000-42600000~~chr21:42825000-42850000,
chr21:42575000-42600000~~chr21:42850000-42875000,
chr21:42575000-42600000~~chr21:42950000-42975000,
chr21:42575000-42600000~~chr21:43000000-43025000,
chr21:42575000-42600000~~chr21:43100000-43125000,
chr21:42575000-42600000~~chr21:43175000-43200000,
chr21:42575000-42600000~~chr21:43300000-43325000,
chr21:42575000-42600000~~chr21:43575000-43600000,
chr21:42575000-42600000~~chr21:43600000-43625000,
chr21:42575000-42600000~~chr21:43625000-43650000,
chr21:42600000-42625000~~chr21:42700000-42725000,
chr21:42600000-42625000~~chr21:42725000-42750000,
chr21:42600000-42625000~~chr21:42800000-42825000,
chr21:42600000-42625000~~chr21:43025000-43050000,
chr21:42600000-42625000~~chr21:43175000-43200000,
chr21:42600000-42625000~~chr21:43625000-43650000,
chr21:42600000-42625000~~chr21:43650000-43675000,
chr21:6425000-6450000~~chr21:42575000-42600000,