Deatailed information for cohesin site CDBP00420433

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  • Basic information
  • CohesinDB ID: CDBP00420433
  • Locus: chr21-42660643-42661368
  • Data sourse: GSE206145-NatGen2015, GSE111913, GSE67783, GSE86191
  • Cell type: RT-112, Fibroblast, HCT-116, HSPC
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 1% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.956
  • Subunit: SA1,Rad21,SMC1
  • CTCF binding site: CTCF CTCF motif: False
  • Genomic location: Intragenic
  • 3D genome
  • TAD boundary: Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
  • Compartment: 86% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): True
  • Chromatin annotation: "5_TxWk": 50%, "14_ReprPCWk": 24%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, NME2, FOXA1, RXRB, KDM3A, HDGF, THAP1, IKZF3, MORC2, PAX5, ZNF320, TEAD1, LMO2, PITX3, ZNF561, SOX5, E2F4, GATAD2A, JARID2, NANOG, ZNF263, POU5F1, TOP2A, STAT1, ZNF134, SAP130, ERG, ZBTB8A, EZH1, SMARCA4, RFX1, ZNF398, RCOR1, NR2F6, CEBPB, HNRNPL, CREB1, GABPB1, ZHX2, MIXL1, ZNF257, KLF17, GATA2, ZNF644, MXD3, FLI1, DRAP1, HCFC1, MXI1, HCFC1R1, RUNX1, CEBPA, NKX2-2, ZNF707, HDAC1, TET2, SP5, SMARCC1, PRDM10, ZBTB2, SOX11, ZBTB10, SP2, SMARCB1, PIAS1, EVI1, MBD1, IKZF5, ARID2, RBM25, ELL2, HMGB1, ETV4, NFATC3, CBFA2T2, MEF2B, CBX3, CREM, CHD2, SS18, PAF1, NFATC1, WT1, NEUROD1, MCM3, TCF4, MAF1, PLAG1, KLF4, BCL11B, ZFP69B, ZNF281, MED, EGR2, ELF3, ARID4B, RXR, EGLN2, HSF1, ZBTB26, SCRT1, FOSL1, ZNF660, XBP1, HNRNPK, ATF3, ZFP64, RUNX3, CBFB, ZNF273, TP63, ZSCAN4, ZNF467, JMJD1C, MAF, ELF1, ZNF573, RBM39, SNAI2, FUS, CTCF, TAF3, L3MBTL4, ZBTB20, MNT, RYBP, DPF2, ZNF423, PDX1, TFAP2C, RBPJ, ZNF317, ZBTB17, ZBTB48, MTA2, NONO, SRF, DDX5, PBX1, KDM4A, HOMEZ, RXRA, NKX3-1, PRDM14, MIER3, HNRNPH1, VDR, NR3C1, KMT2A, ZBTB11, CCAR2, KLF8, GRHL2, EBF3, SMARCA5, NFIL3, THAP11, EZH2phosphoT487, SOX13, AFF4, POU4F2, ZNF18, SP3, ARNT, NFIB, ZNF48, PRDM9, ZEB2, PBX3, MAFB, ZNF10, NCAPH2, HMGXB4, TEAD3, ZXDB, KLF9, USF1, SP1, BCL11A, TFAP2A, ZNF479, ASH2L, GLIS2, SMC3, STAG1, STAG2, ZNF394, TRP47, AGO1, MTA3, EBF1, ZNF580, ZKSCAN1, BCL3, KDM1A, ZNF441, BRG1, ZIC2, PCGF1, GATA3, KLF15, TAL1, ZNF143, AGO2, MTA1, CBX2, TP53, ZNF334, ZSCAN22, PHF5A, BRD2, KAT8, TBX21, EGR1, TFIIIC, IKZF2, BRD4, JUND, SPIN1, PGR, SOX2, PATZ1, RING1B, TFAP4, CHD7, ZNF444, MXD4, ZNF189, SMARCE1, MZF1, KLF6, NFE2L2, SAP30, ESR1, ZNF217, KLF1, SOX4, E2F6, TRIM24, RFX5, GLIS1, POU2F2, ZSCAN5D, ZNF778, ZSCAN5A, ERG2, SP4, TBP, HNF4G, HOXC5, OGG1, ETS1, MYC, NKX2-1, GABPA, MCRS1, STAT3, IKZF1, DNMT3B, EZH2, ZNF652, PHF8, SPI1, ZNF202, PCBP1, HDAC2, GATAD2B, ETV5, BCL6, SIN3A, ERG3, RARA, CREBBP, ZNF35, TAF15, SMAD4, CDK8, CSNK2A1, ZEB1, ZMYM3, RBM22, HNF4A, REST, ARID1A, ZHX1, HNRNPLL, ZNF543, BCOR, FOXP1, AATF, NCOR2, CXXC4, PPARG, ZNF692, ZNF30, ZNF662, RELA, TARDBP, MAX, GFI1B, NR2F1, NEUROG2, KDM5B, TCF7L2, ZNF547, RUVBL1, MYOD1, T, AR, ZNF324, HEXIM1, DMAP1, AHR, MBD3, HMG20A, ZSCAN5C, SUZ12, RBFOX2, ZFHX2, ZNF90, NFIC, CTCFL, PRDM1, MECOM, ZNF736, HDAC3, KLF5, TRIM28, ETV1, RCOR2, USF2, TCF12, EP300, BAF155, PRDM4, E2F1, SMC1, TEAD4, FOXA3, EED, CHD8, BRD1, MYCN, CDK7, ID3, GATAD1, ASCL1, ZNF341, RAD21, GRHL3, XRCC5, ZNF614, TFE3, HBP1, ZNF664, ZGPAT, MRTFB, PTBP1, SMC1A, CBX1, SIRT6, FIP1L1, ZFX, ZNF534, ZNF335, SMAD3, CBX8, TWIST1, PRPF4, NOTCH1, RUNX2, SMAD2, OSR2, ZNF184, NRF1, PBX4, FOS, CHD1, MED1, CEBPD, MYB, SCRT2, KDM6B, VEZF1, ZNF3, L3MBTL2, SETDB1, NIPBL, ZBTB7A, POU2F3, PHIP, TCF3, SKI, ZNF283, FOXA2, RBBP5, ZNF600, MIER2, FOXF1, CDK9, HOXB13, YY1, ZNF148, SP140, HIF1A, OTX2, ZNF449, GATA1, HAND2, TLE3, CEBPG, SP7, BHLHE40, NFKBIZ, TAF1, ZBTB42, MYNN, MAZ
  • Target gene symbol (double-evidenced CRMs): AGPAT3,RIPK4,PKNOX1,UMODL1,PDE9A,BACE2
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 13
  • Number of somatic mutations (non-coding): 0
  • Related genes and loops
  • Related gene: ENSG00000182240, ENSG00000183421, ENSG00000177398, ENSG00000160191, ENSG00000160199, ENSG00000160216,
  • Related loop: chr21:41200000-41225000~~chr21:42650000-42675000, chr21:41700000-41725000~~chr21:42650000-42675000, chr21:41750000-41775000~~chr21:42650000-42675000, chr21:42125000-42150000~~chr21:42650000-42675000, chr21:42650000-42675000~~chr21:42800000-42825000, chr21:42650000-42675000~~chr21:43000000-43025000, chr21:42650000-42675000~~chr21:43175000-43200000, chr21:42650000-42675000~~chr21:43300000-43325000, chr21:42650000-42675000~~chr21:43950000-43975000,
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