- Basic information
- CohesinDB ID: CDBP00420452
- Locus: chr21-42708001-42708873
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Data sourse: GSE67783, ENCSR404BPV, GSE86191
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Cell type: Neurons-H1, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21,SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 35%,
"5_TxWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NCOA2, GLIS1, RUNX1, CBFA2T2, CHD8, NANOG, FOXA2, MYCN, CREM, ZNF263, PAF1, ZFX, POU5F1, XBP1, ZNF207, ZBTB48, WT1, SMAD3, SOX2, TEAD4, ZNF317, CBX8, DDX5, PBX2, RELA, ATF3, MYC, RAD21, SP140, GRHL3, HIF1A, CHD7, ATF2, STAT3, MAX, MAF1, ZNF143, MITF, PLAG1, GMEB1, CBX2, TEAD3, ZEB1, NCOA3, CREB1, TFAP2C, EZH2, OCA2, USF2, NFKB1, CTCF, RBM22, USF1, EP300, SP1, BHLHE40, AR, EGR1, HSF1, RAD51, NCOR1, CTBP2, BCOR, E2F1, MAZ, SMC3, ATF1, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): PDE9A,SLC37A1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 52
- Number of somatic mutations (non-coding): 0
- Related genes and loops