- Basic information
- CohesinDB ID: CDBP00420462
- Locus: chr21-42741003-42741674
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Data sourse: GSE67783, GSE111913, ENCSR153HNT, GSE86191
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Cell type: K-562, RT-112, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
86% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 38%,
"15_Quies": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: YBX1, ZBTB2, GATA6, HDAC2, GMEB1, TEAD3, HDAC1, GATA2, ZNF366, MCM7, FOXA2, GATAD2B, ZBTB17, GATA3, GATA1, DACH1
- Target gene symbol (double-evidenced CRMs): HSF2BP,PDE9A,SLC37A1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 39
- Number of somatic mutations (non-coding): 0
- Related genes and loops