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Basic information

CohesinDB ID: CDBP00420485

Locus: chr21-42794079-42794902

Data sourse: GSE206145, GSE67783, ENCSR153HNT, GSE86191

Cell type: K-562, HCT-116, HSPC, RPE

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 83% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 41%, "14_ReprPCWk": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: THAP11, NFIA, TRP47, NANOG, SMC1A, PPARG, BCL6, MYCN, POU5F1, ZFX, WT1, ZBTB48, FOXA1, SAP130, ETV5, RXRB, ZNF580, ZBTB2, ZNF384, ASCL1, NEUROD1, AHR, RAD21, SP140, CHD7, ZNF444, HIF1A, SOX11, OTX2, ZNF48, MXD4, ZNF614, HMGXB4, TEAD3, TEAD1, PIAS1, KDM5B, RCOR2, ESR1, C11orf30, CTCF, ELF3, KAT8, ZNF579, IKZF5, REST, PAX8, ZGPAT, BCOR, SMC3, GATAD2A, STAG1, RBPJ

Target gene symbol (double-evidenced CRMs): ABCG1,SLC37A1,PDE9A,UMODL1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 4

Related genes and loops

Related gene: ENSG00000177398, ENSG00000160179, ENSG00000160190, ENSG00000160191,

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Deatailed information for cohesin site CDBP00420485