- Basic information
- CohesinDB ID: CDBP00420493
- Locus: chr21-42810534-42811625
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE67783, GSE86191, ENCSR000BSB, ENCSR153HNT
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Cell type: MCF-7, H1-hESC, HCT-116, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 45%,
"14_ReprPCWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF621, XBP1, FOXA1, SUZ12, ZSCAN4, ZNF121, SNAI2, LMO2, ESR1, OCA2, TP73, JUN, CTCF, EP300, MNT, PAX8, EED, GLIS1, NANOG, POU2F2, BRD1, CHD8, ZNF263, POU5F1, MYCN, ZBTB48, DDX5, SP4, ERG, ZNF341, EZH1, MYC, SMARCA4, RAD21, GRHL3, GABPA, ARNTL, NR3C1, CREB1, EZH2, SPI1, SSRP1, GATA2, NCOA2, RUNX1, SMC1A, BCL6, CRY1, ZFX, POU4F2, ZNF770, TET2, ZNF384, CDK6, ARNT, ETV6, PBX3, FOS, MED1, ZNF680, ZNF3, NCOA1, SETDB1, BCL11A, GSPT2, ARID2, TCF3, SMC3, STAG1, TRP47, PPARG, TBL1X, FOXA2, NFATC1, GTF2B, ZNF30, WT1, CDK9, BCL3, KDM1A, YY1, RELA, MCM3, SP140, ZIC2, HIF1A, GATA3, TAL1, MAX, MAF1, NRIP1, ZNF143, GATA1, KLF4, NCOA3, NR2F1, TP53, ZNF334, AR, ZBTB26, JUND, CLOCK, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): FAM3B,HSF2BP,ABCG1,UBASH3A,BACE2,TFF2,PDE9A,UMODL1,PRDM15,TMPRSS3,SLC37A1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000141956,
ENSG00000177398,
ENSG00000160179,
ENSG00000160181,
ENSG00000160183,
ENSG00000160185,
ENSG00000160190,
ENSG00000160191,
ENSG00000160207,
- Related loop:
chr21:41275000-41300000~~chr21:42800000-42825000,
chr21:41575000-41600000~~chr21:42800000-42825000,
chr21:41800000-41825000~~chr21:42800000-42825000,
chr21:42125000-42150000~~chr21:42800000-42825000,
chr21:42150000-42175000~~chr21:42800000-42825000,
chr21:42175000-42200000~~chr21:42800000-42825000,
chr21:42200000-42225000~~chr21:42800000-42825000,
chr21:42300000-42325000~~chr21:42800000-42825000,
chr21:42325000-42350000~~chr21:42800000-42825000,
chr21:42375000-42400000~~chr21:42800000-42825000,
chr21:42400000-42425000~~chr21:42800000-42825000,
chr21:42525000-42550000~~chr21:42800000-42825000,
chr21:42550000-42575000~~chr21:42800000-42825000,
chr21:42575000-42600000~~chr21:42800000-42825000,
chr21:42600000-42625000~~chr21:42800000-42825000,
chr21:42625000-42650000~~chr21:42800000-42825000,
chr21:42650000-42675000~~chr21:42800000-42825000,
chr21:42675000-42700000~~chr21:42800000-42825000,
chr21:42700000-42725000~~chr21:42800000-42825000,
chr21:42800000-42825000~~chr21:43175000-43200000,
chr21:42800000-42825000~~chr21:43300000-43325000,
chr21:42800000-42825000~~chr21:43575000-43600000,
chr21:42800000-42825000~~chr21:43625000-43650000,
chr21:42806064-42807428~~chr21:43644880-43647795,