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Basic information

CohesinDB ID: CDBP00420494

Locus: chr21-42812043-42812143

Data sourse: GSE105028

Cell type: H9-hESC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 83% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 44%, "14_ReprPCWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, TP53, BRD4, ESR1, TP63, EHF

Target gene symbol (double-evidenced CRMs): HSF2BP,SLC37A1,BACE2,UMODL1,TMPRSS3,FAM3B,PRDM15,PDE9A,UBASH3A,ABCG1,TFF2

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000182240, ENSG00000183844, ENSG00000141956, ENSG00000177398, ENSG00000160179, ENSG00000160181, ENSG00000160183, ENSG00000160185, ENSG00000160190, ENSG00000160191, ENSG00000160207,

eachgene

Deatailed information for cohesin site CDBP00420494