- Basic information
- CohesinDB ID: CDBP00420497
- Locus: chr21-42816699-42821466
-
Data sourse: ENCSR230ZWH, ENCSR000FAD, ENCSR000BSB, ENCSR000EGW, GSE131606, ENCSR330ELC, ENCSR000BUC, ENCSR000DYE, ENCSR917QNE, GSE115602, GSE139435, GSE93080, GSE67783, GSE86191, GSE36578, GSE101921, ENCSR806UKK, GSE51234, GSE120943, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR199XBQ, GSE94872, ENCSR895JMI, GSE118494, ENCSR000EEG, ENCSR338DUC, GSE130140, ENCSR247LSH, GSE105004, ENCSR676MJK, GSE155324, ENCSR054FKH, GSE83726, GSE126755, ENCSR748MVX, ENCSR000ECS, GSE131577, ENCSR000BLD, GSE38411, GSE104888, GSE126634, GSE103477, GSE108869, GSE143937, GSE138405, GSE135093, GSE106870, ENCSR193NSH, GSE206145, GSE85526, ENCSR000ECE, ENCSR620NWG, ENCSR767DFK, ENCSR984DZW, GSE55407, ENCSR000BTQ, GSE129526, ENCSR537EFT, ENCSR760NPX, ENCSR000BLY, ENCSR150EFU, GSE121355, GSE111537, GSE25021, ENCSR000EAC, GSE122299, GSE115250, GSE76893, GSE145327, GSE76815, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE97394, ENCSR217ELF, GSE131956, GSE110061, ENCSR000HPG, GSE111913, ENCSR335RKQ, ENCSR000EDE, GSE50893, ENCSR481YWD, GSE206145-GSE177045, GSE72082, ENCSR501LQA, GSE116868, ENCSR404BPV, GSE105028, ENCSR000EDW, GSE165895, ENCSR000EFJ, ENCSR000BTU, ENCSR000DZP, ENCSR000BKV, GSE152721, GSE206145-NatGen2015, GSE138105, ENCSR703TNG, GSE116344, GSE98367, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, ENCSR981FDC, ENCSR807WAC, GSE62063, ENCSR495WGO, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR153HNT, GSE68388, GSE126990
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, OCI-AML-3, HSPC, CUTLL1, CVI-hiPSC, Liver, GP5d, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, HMEC, Fibroblast, RPE, HEKn, THP-1, Ishikawa, GM12890, HeLa-S3, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, TC-71, GM12891, GM2588, GBM39, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, RT-112, HAP1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, A-549, HUVEC, HCAEC, Ramos, GM19238, HeLa, CNCC-WT33iPSC, BGO3, Neutrophil, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 78% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.156
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
-
CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 37%,
"14_ReprPCWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF22, PLAG1, ZNF362, ZNF384
- Target gene symbol (double-evidenced CRMs): PRDM15,BACE2,TFF2,PDE9A,HSF2BP,SLC37A1,UBASH3A,UMODL1,TMPRSS3,FAM3B,ABCG1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 21
- Related genes and loops
- Related gene:
ENSG00000182240,
ENSG00000183844,
ENSG00000141956,
ENSG00000177398,
ENSG00000160179,
ENSG00000160181,
ENSG00000160183,
ENSG00000160185,
ENSG00000160190,
ENSG00000160191,
ENSG00000160207,
- Related loop:
chr21:41275000-41300000~~chr21:42800000-42825000,
chr21:41425000-41450000~~chr21:42825000-42850000,
chr21:41575000-41600000~~chr21:42800000-42825000,
chr21:41625000-41650000~~chr21:42825000-42850000,
chr21:41800000-41825000~~chr21:42800000-42825000,
chr21:42125000-42150000~~chr21:42800000-42825000,
chr21:42125000-42150000~~chr21:42825000-42850000,
chr21:42144207-42146848~~chr21:42816981-42819855,
chr21:42144672-42146558~~chr21:42817722-42819834,
chr21:42144776-42146791~~chr21:42817609-42819795,
chr21:42150000-42175000~~chr21:42800000-42825000,
chr21:42150000-42175000~~chr21:42825000-42850000,
chr21:42175000-42200000~~chr21:42800000-42825000,
chr21:42200000-42225000~~chr21:42800000-42825000,
chr21:42300000-42325000~~chr21:42800000-42825000,
chr21:42325000-42350000~~chr21:42800000-42825000,
chr21:42375000-42400000~~chr21:42800000-42825000,
chr21:42400000-42425000~~chr21:42800000-42825000,
chr21:42525000-42550000~~chr21:42800000-42825000,
chr21:42539061-42541105~~chr21:42817512-42819474,
chr21:42539601-42540779~~chr21:42817608-42819476,
chr21:42550000-42575000~~chr21:42800000-42825000,
chr21:42575000-42600000~~chr21:42800000-42825000,
chr21:42575000-42600000~~chr21:42825000-42850000,
chr21:42591800-42594557~~chr21:42817599-42819253,
chr21:42591816-42594710~~chr21:42817609-42819795,
chr21:42591930-42594651~~chr21:42817479-42819462,
chr21:42592083-42595449~~chr21:42817516-42819501,
chr21:42592094-42594696~~chr21:42816981-42819855,
chr21:42592095-42594654~~chr21:42817473-42819754,
chr21:42592101-42594282~~chr21:42817616-42819574,
chr21:42592185-42594697~~chr21:42817666-42819271,
chr21:42592203-42594584~~chr21:42817512-42819474,
chr21:42592223-42594608~~chr21:42817647-42819424,
chr21:42592228-42594698~~chr21:42817557-42819404,
chr21:42592229-42594657~~chr21:42817512-42819518,
chr21:42592232-42594552~~chr21:42816994-42819826,
chr21:42592233-42594706~~chr21:42817623-42819579,
chr21:42592240-42594527~~chr21:42817801-42819538,
chr21:42592259-42595490~~chr21:42817071-42819521,
chr21:42592286-42594690~~chr21:42817550-42819555,
chr21:42592287-42594650~~chr21:42817467-42819560,
chr21:42592306-42594651~~chr21:42817594-42819293,
chr21:42592309-42594705~~chr21:42817625-42819509,
chr21:42592336-42594720~~chr21:42817462-42819526,
chr21:42592439-42594535~~chr21:42817761-42819521,
chr21:42592470-42594527~~chr21:42817758-42819553,
chr21:42592470-42595465~~chr21:42817608-42819476,
chr21:42592472-42595486~~chr21:42817007-42819565,
chr21:42592503-42594438~~chr21:42817722-42819834,
chr21:42592503-42594551~~chr21:42817739-42819439,
chr21:42592508-42594238~~chr21:42816981-42819538,
chr21:42592534-42594617~~chr21:42817712-42819599,
chr21:42592557-42594649~~chr21:42817499-42819241,
chr21:42592622-42594193~~chr21:42817638-42819088,
chr21:42592644-42594180~~chr21:42817432-42819171,
chr21:42592645-42594660~~chr21:42817615-42819165,
chr21:42592647-42594289~~chr21:42817691-42819126,
chr21:42592654-42594700~~chr21:42817528-42819098,
chr21:42592693-42594316~~chr21:42817613-42819116,
chr21:42592736-42594162~~chr21:42817665-42819135,
chr21:42592744-42594126~~chr21:42817752-42819044,
chr21:42600000-42625000~~chr21:42800000-42825000,
chr21:42625000-42650000~~chr21:42800000-42825000,
chr21:42650000-42675000~~chr21:42800000-42825000,
chr21:42651607-42653884~~chr21:42817557-42819404,
chr21:42651695-42653675~~chr21:42817609-42819795,
chr21:42651926-42653288~~chr21:42817594-42819293,
chr21:42651964-42653518~~chr21:42817467-42819560,
chr21:42652851-42655141~~chr21:42817499-42819241,
chr21:42675000-42700000~~chr21:42800000-42825000,
chr21:42700000-42725000~~chr21:42800000-42825000,
chr21:42791205-42793251~~chr21:42817675-42819687,
chr21:42791244-42793306~~chr21:42817654-42819493,
chr21:42791318-42793181~~chr21:42817479-42819462,
chr21:42791421-42793239~~chr21:42817550-42819555,
chr21:42800000-42825000~~chr21:43175000-43200000,
chr21:42800000-42825000~~chr21:43300000-43325000,
chr21:42800000-42825000~~chr21:43575000-43600000,
chr21:42800000-42825000~~chr21:43625000-43650000,
chr21:42825000-42850000~~chr21:43675000-43700000,
chr21:42825000-42850000~~chr21:44900000-44925000,