- Basic information
- CohesinDB ID: CDBP00420498
- Locus: chr21-42826351-42826612
-
Data sourse: ENCSR000BLD, GSE67783, ENCSR153HNT
-
Cell type: K-562, H1-hESC, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"14_ReprPCWk": 65%,
"15_Quies": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: DUX4, ZFX
- Target gene symbol (double-evidenced CRMs): SLC37A1,RRP1B,MX1,UMODL1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000157601,
ENSG00000177398,
ENSG00000160190,
ENSG00000160208,
- Related loop:
chr21:41275000-41300000~~chr21:42800000-42825000,
chr21:41425000-41450000~~chr21:42825000-42850000,
chr21:41575000-41600000~~chr21:42800000-42825000,
chr21:41625000-41650000~~chr21:42825000-42850000,
chr21:41800000-41825000~~chr21:42800000-42825000,
chr21:42125000-42150000~~chr21:42800000-42825000,
chr21:42125000-42150000~~chr21:42825000-42850000,
chr21:42150000-42175000~~chr21:42800000-42825000,
chr21:42150000-42175000~~chr21:42825000-42850000,
chr21:42175000-42200000~~chr21:42800000-42825000,
chr21:42200000-42225000~~chr21:42800000-42825000,
chr21:42300000-42325000~~chr21:42800000-42825000,
chr21:42325000-42350000~~chr21:42800000-42825000,
chr21:42375000-42400000~~chr21:42800000-42825000,
chr21:42400000-42425000~~chr21:42800000-42825000,
chr21:42525000-42550000~~chr21:42800000-42825000,
chr21:42550000-42575000~~chr21:42800000-42825000,
chr21:42575000-42600000~~chr21:42800000-42825000,
chr21:42575000-42600000~~chr21:42825000-42850000,
chr21:42592259-42595490~~chr21:42830397-42831857,
chr21:42592654-42594700~~chr21:42830471-42831810,
chr21:42600000-42625000~~chr21:42800000-42825000,
chr21:42625000-42650000~~chr21:42800000-42825000,
chr21:42650000-42675000~~chr21:42800000-42825000,
chr21:42675000-42700000~~chr21:42800000-42825000,
chr21:42700000-42725000~~chr21:42800000-42825000,
chr21:42800000-42825000~~chr21:43175000-43200000,
chr21:42800000-42825000~~chr21:43300000-43325000,
chr21:42800000-42825000~~chr21:43575000-43600000,
chr21:42800000-42825000~~chr21:43625000-43650000,
chr21:42825000-42850000~~chr21:43675000-43700000,
chr21:42825000-42850000~~chr21:44900000-44925000,