- Basic information
- CohesinDB ID: CDBP00420522
- Locus: chr21-42888778-42889585
-
Data sourse: GSE67783, ENCSR153HNT
-
Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 69%,
"5_TxWk": 28%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: MED1, RELA, NCOA3, PPARG, EBF1, ZFX, ESR1, MAZ, APC
- Target gene symbol (double-evidenced CRMs): RRP1B,NDUFV3,SUMO3,CSTB,DNMT3L,RRP1,HSF2BP,UBE2G2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops
- Related gene:
ENSG00000160194,
ENSG00000160207,
ENSG00000160208,
ENSG00000160213,
ENSG00000160214,
ENSG00000142182,
ENSG00000184787,
ENSG00000184900,
- Related loop:
chr21:42875000-42900000~~chr21:43175000-43200000,
chr21:42875000-42900000~~chr21:43325000-43350000,
chr21:42875000-42900000~~chr21:43350000-43375000,
chr21:42875000-42900000~~chr21:43625000-43650000,
chr21:42875000-42900000~~chr21:43650000-43675000,
chr21:42875000-42900000~~chr21:43775000-43800000,
chr21:42875000-42900000~~chr21:44250000-44275000,
chr21:42875000-42900000~~chr21:44800000-44825000,
chr21:42892194-42894528~~chr21:43717961-43720857,
chr21:6475000-6500000~~chr21:42875000-42900000,