- Basic information
- CohesinDB ID: CDBP00420532
- Locus: chr21-42908791-42909506
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 76%,
"5_TxWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SMC1A, ZSCAN5D, PAF1, ZFX, XBP1, DDX5, ERG, MYC, NKX2-1, GABPA, SUPT5H, DNMT3B, ARNTL, NFE2L2, EZH2, OCA2, CTCF, RBM22, AR, GATA2, BRD4, AHR
- Target gene symbol (double-evidenced CRMs): U2AF1,HSF2BP,RRP1B,PKNOX1,CBS,NDUFV3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 59
- Number of somatic mutations (non-coding): 12
- Related genes and loops
- Related gene:
ENSG00000160194,
ENSG00000160199,
ENSG00000160200,
ENSG00000160201,
ENSG00000160207,
ENSG00000160208,
- Related loop:
chr21:42900000-42925000~~chr21:43000000-43025000,
chr21:42900000-42925000~~chr21:43025000-43050000,
chr21:42900000-42925000~~chr21:43100000-43125000,
chr21:42900000-42925000~~chr21:43175000-43200000,
chr21:42900000-42925000~~chr21:43200000-43225000,
chr21:42900000-42925000~~chr21:43300000-43325000,
chr21:42900000-42925000~~chr21:43325000-43350000,
chr21:42900000-42925000~~chr21:43350000-43375000,
chr21:42900000-42925000~~chr21:43600000-43625000,
chr21:42900000-42925000~~chr21:43625000-43650000,
chr21:42900000-42925000~~chr21:43650000-43675000,
chr21:6425000-6450000~~chr21:42900000-42925000,
chr21:6475000-6500000~~chr21:42900000-42925000,