- Basic information
- CohesinDB ID: CDBP00420542
- Locus: chr21-42933507-42933865
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Data sourse: ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 63%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, RUNX2, FOXA2, ESR1, BRD4, RXRA, FOXA1, ZNF449, ERG, HNF4A
- Target gene symbol (double-evidenced CRMs): RRP1B,CBS,PKNOX1,HSF2BP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000160199,
ENSG00000160200,
ENSG00000160207,
ENSG00000160208,
- Related loop:
chr21:27500000-27525000~~chr21:42925000-42950000,
chr21:42925000-42950000~~chr21:43025000-43050000,
chr21:42925000-42950000~~chr21:43175000-43200000,
chr21:42925000-42950000~~chr21:43300000-43325000,
chr21:42925000-42950000~~chr21:43325000-43350000,
chr21:42925000-42950000~~chr21:43350000-43375000,
chr21:42925000-42950000~~chr21:43575000-43600000,
chr21:42925000-42950000~~chr21:43625000-43650000,
chr21:42925000-42950000~~chr21:43650000-43675000,
chr21:42925000-42950000~~chr21:43675000-43700000,
chr21:42936873-42938284~~chr21:42956494-42958234,
chr21:6475000-6500000~~chr21:42925000-42950000,