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Basic information

CohesinDB ID: CDBP00420544

Locus: chr21-42948707-42949766

Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE67783, GSE111913, GSE120943, ENCSR153HNT, ENCSR917QNE

Cell type: H1-hESC, Monocytes, RT-112, K-562, Liver, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 3% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.933

Subunit: SA1,Rad21,SA2,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 83% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 71%, "9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: MED1, AR, ZNF750, MYC, IRF4, TP63, BRD4, CDK9

Target gene symbol (double-evidenced CRMs): HSF2BP,PKNOX1,RRP1B,CBS

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 6

Related genes and loops

Related gene: ENSG00000160199, ENSG00000160200, ENSG00000160207, ENSG00000160208,

eachgene

Deatailed information for cohesin site CDBP00420544