- Basic information
- CohesinDB ID: CDBP00420567
- Locus: chr21-42998695-42999369
-
Data sourse: GSE67783, ENCSR153HNT, GSE86191
-
Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
83% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 46%,
"9_Het": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: TRIM28, ZNF585B, ZFX, CBX3
- Target gene symbol (double-evidenced CRMs): PFKL,HSF2BP,RRP1B,CFAP410,SUMO3,DNMT3L,UBE2G2,UMODL1,PKNOX1,TRPM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000177398,
ENSG00000160199,
ENSG00000160207,
ENSG00000160208,
ENSG00000142182,
ENSG00000141959,
ENSG00000160226,
ENSG00000142185,
ENSG00000184787,
ENSG00000184900,
- Related loop:
chr21:27500000-27525000~~chr21:43000000-43025000,
chr21:34350000-34375000~~chr21:42975000-43000000,
chr21:39625000-39650000~~chr21:42975000-43000000,
chr21:41650000-41675000~~chr21:43000000-43025000,
chr21:42050000-42075000~~chr21:42975000-43000000,
chr21:42550000-42575000~~chr21:43000000-43025000,
chr21:42575000-42600000~~chr21:43000000-43025000,
chr21:42625000-42650000~~chr21:43000000-43025000,
chr21:42650000-42675000~~chr21:43000000-43025000,
chr21:42675000-42700000~~chr21:43000000-43025000,
chr21:42900000-42925000~~chr21:43000000-43025000,
chr21:42974806-42976955~~chr21:42996600-42998372,
chr21:42975000-43000000~~chr21:43325000-43350000,
chr21:42975000-43000000~~chr21:43350000-43375000,
chr21:42975000-43000000~~chr21:43575000-43600000,
chr21:42975000-43000000~~chr21:43650000-43675000,
chr21:42975000-43000000~~chr21:44250000-44275000,
chr21:42975000-43000000~~chr21:44325000-44350000,
chr21:42975000-43000000~~chr21:44800000-44825000,
chr21:43000000-43025000~~chr21:43100000-43125000,
chr21:43000000-43025000~~chr21:43175000-43200000,
chr21:43000000-43025000~~chr21:43200000-43225000,
chr21:43000000-43025000~~chr21:43275000-43300000,
chr21:43000000-43025000~~chr21:43300000-43325000,
chr21:43000000-43025000~~chr21:43325000-43350000,
chr21:43000000-43025000~~chr21:43350000-43375000,
chr21:43000000-43025000~~chr21:43575000-43600000,
chr21:43000000-43025000~~chr21:43600000-43625000,
chr21:43000000-43025000~~chr21:43625000-43650000,
chr21:43000000-43025000~~chr21:43650000-43675000,
chr21:43000000-43025000~~chr21:43675000-43700000,
chr21:43000000-43025000~~chr21:43900000-43925000,
chr21:43000000-43025000~~chr21:43975000-44000000,
chr21:43000000-43025000~~chr21:44025000-44050000,
chr21:43000000-43025000~~chr21:44050000-44075000,
chr21:43000000-43025000~~chr21:44075000-44100000,
chr21:6425000-6450000~~chr21:43000000-43025000,