- Basic information
- CohesinDB ID: CDBP00420580
- Locus: chr21-43027260-43028315
-
Data sourse: ENCSR000BLD, GSE67783, GSE86191, GSE105028, GSE206145-NatGen2015, GSE206145, ENCSR153HNT
-
Cell type: RPE, H1-hESC, Fibroblast, HCT-116, K-562, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
57% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"4_Tx": 48%,
"5_TxWk": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CHD8, ARID1A, MYC, ZFX, BRD4, JUN
- Target gene symbol (double-evidenced CRMs): NDUFV3,HSF2BP,TRAPPC10,TSPEAR,PDE9A,PDXK,PKNOX1,RRP1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000160191,
ENSG00000160194,
ENSG00000160199,
ENSG00000160207,
ENSG00000160208,
ENSG00000160209,
ENSG00000160218,
ENSG00000175894,
- Related loop:
chr21:27500000-27525000~~chr21:43000000-43025000,
chr21:41650000-41675000~~chr21:43000000-43025000,
chr21:42550000-42575000~~chr21:43000000-43025000,
chr21:42575000-42600000~~chr21:43000000-43025000,
chr21:42600000-42625000~~chr21:43025000-43050000,
chr21:42625000-42650000~~chr21:43000000-43025000,
chr21:42650000-42675000~~chr21:43000000-43025000,
chr21:42675000-42700000~~chr21:43000000-43025000,
chr21:42675000-42700000~~chr21:43025000-43050000,
chr21:42900000-42925000~~chr21:43000000-43025000,
chr21:42900000-42925000~~chr21:43025000-43050000,
chr21:42925000-42950000~~chr21:43025000-43050000,
chr21:43000000-43025000~~chr21:43100000-43125000,
chr21:43000000-43025000~~chr21:43175000-43200000,
chr21:43000000-43025000~~chr21:43200000-43225000,
chr21:43000000-43025000~~chr21:43275000-43300000,
chr21:43000000-43025000~~chr21:43300000-43325000,
chr21:43000000-43025000~~chr21:43325000-43350000,
chr21:43000000-43025000~~chr21:43350000-43375000,
chr21:43000000-43025000~~chr21:43575000-43600000,
chr21:43000000-43025000~~chr21:43600000-43625000,
chr21:43000000-43025000~~chr21:43625000-43650000,
chr21:43000000-43025000~~chr21:43650000-43675000,
chr21:43000000-43025000~~chr21:43675000-43700000,
chr21:43000000-43025000~~chr21:43900000-43925000,
chr21:43000000-43025000~~chr21:43975000-44000000,
chr21:43000000-43025000~~chr21:44025000-44050000,
chr21:43000000-43025000~~chr21:44050000-44075000,
chr21:43000000-43025000~~chr21:44075000-44100000,
chr21:43025000-43050000~~chr21:43175000-43200000,
chr21:43025000-43050000~~chr21:43300000-43325000,
chr21:43025000-43050000~~chr21:43350000-43375000,
chr21:43025000-43050000~~chr21:43650000-43675000,
chr21:43025000-43050000~~chr21:43725000-43750000,
chr21:43025000-43050000~~chr21:44075000-44100000,
chr21:43025000-43050000~~chr21:44500000-44525000,
chr21:6425000-6450000~~chr21:43000000-43025000,
chr21:6425000-6450000~~chr21:43025000-43050000,