- Basic information
- CohesinDB ID: CDBP00420588
- Locus: chr21-43041584-43043029
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, ENCSR000BSB, GSE116868, GSE105028, GSE131606, GSE108869, GSE25021, ENCSR000BUC, ENCSR917QNE, ENCSR000BTU, GSE67783, GSE86191, GSE76893, GSE101921, GSE206145-NatGen2015, GSE138105, GSE94872, ENCSR000EEG, ENCSR338DUC, ENCSR193NSH, ENCSR000BLS, ENCSR000ECE, ENCSR984DZW, GSE97394, ENCSR217ELF, ENCSR000BTQ, ENCSR167MTG, GSE129526, GSE111913, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE83726, GSE50893, GSE126755, ENCSR000ECS
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Cell type: RH4, SLK, GM19240, Liver, HuCC-T1, H9-hESC, Fibroblast, Ishikawa, GM12890, HeLa-S3, K-562, DKO, H1-hESC, MB157, RT-112, HUES64, MCF-7, GM12892, HCT-116, Hep-G2, A-549, HUVEC, HCAEC, Neutrophil, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 14% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.722
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: False
- Compartment:
57% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 48%,
"8_ZNF/Rpts": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): TSPEAR,TRAPPC10,RRP1B,PDXK,PDE9A,HSF2BP,NDUFV3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000160191,
ENSG00000160194,
ENSG00000160207,
ENSG00000160208,
ENSG00000160209,
ENSG00000160218,
ENSG00000175894,
- Related loop:
chr21:42600000-42625000~~chr21:43025000-43050000,
chr21:42675000-42700000~~chr21:43025000-43050000,
chr21:42900000-42925000~~chr21:43025000-43050000,
chr21:42925000-42950000~~chr21:43025000-43050000,
chr21:43025000-43050000~~chr21:43175000-43200000,
chr21:43025000-43050000~~chr21:43300000-43325000,
chr21:43025000-43050000~~chr21:43350000-43375000,
chr21:43025000-43050000~~chr21:43650000-43675000,
chr21:43025000-43050000~~chr21:43725000-43750000,
chr21:43025000-43050000~~chr21:44075000-44100000,
chr21:43025000-43050000~~chr21:44500000-44525000,
chr21:6425000-6450000~~chr21:43025000-43050000,