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Basic information

CohesinDB ID: CDBP00420590

Locus: chr21-43044579-43047606

Data sourse: ENCSR000BLD, GSE206145-GSE177045, ENCSR230ZWH, GSE72082, GSE116868, ENCSR000EGW, GSE105028, GSE131606, GSE108869, GSE25021, ENCSR917QNE, GSE165895, ENCSR000BTU, GSE93080, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE206145-NatGen2015, GSE116344, ENCSR703TNG, ENCSR000EEG, ENCSR338DUC, GSE98367, ENCSR879KXD, ENCSR000BLS, GSE206145, ENCSR000ECE, GSE62063, GSE97394, ENCSR167MTG, GSE111913, GSE38411, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE83726, GSE126990, GSE50893, ENCSR000ECS, GSE131577

Cell type: RH4, GM2610, GM19240, Liver, H9-hESC, RPE, Fibroblast, Ishikawa, GM12890, HeLa-S3, BCBL-1, K-562, HFFc6, DKO, H1-hESC, MB157, GM12878, GM12891, RT-112, Macrophage, HUES64, MCF-7, GM12892, Ramos, Hela-Kyoto, HCT-116, HL-60, Hep-G2, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 16% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.678

Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3

CTCF binding site: CTCF CTCF motif: True

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 57% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "7_Enh": 38%, "5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CTCF

Target gene symbol (double-evidenced CRMs): HSF2BP,RRP1B,TSPEAR,PDXK,PDE9A,TRAPPC10,NDUFV3

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 17

Related genes and loops

Related gene: ENSG00000160191, ENSG00000160194, ENSG00000160207, ENSG00000160208, ENSG00000160209, ENSG00000160218, ENSG00000175894,

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Deatailed information for cohesin site CDBP00420590