- Basic information
- CohesinDB ID: CDBP00420599
- Locus: chr21-43063281-43067025
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Data sourse: ENCSR000BLD, ENCSR000BTU, ENCSR230ZWH, GSE67783, GSE86191, GSE105028, GSE206145-NatGen2015, GSE206145, ENCSR153HNT, GSE131606
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Cell type: RPE, H1-hESC, Fibroblast, HCT-116, Ishikawa, K-562, Liver, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: Mau2,SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
57% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 20%,
"5_TxWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): CBS
- Function elements
- Human SNPs: Homocysteine_levels
- Number of somatic mutations (coding): 572
- Number of somatic mutations (non-coding): 143
- Related genes and loops