- Basic information
- CohesinDB ID: CDBP00420606
- Locus: chr21-43079407-43080410
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Data sourse: GSE72082, GSE105028, GSE111537, GSE25021, GSE131606, GSE165895, GSE143937, ENCSR000BKV, GSE86191, GSE76893, GSE206145-NatGen2015, ENCSR703TNG, GSE116344, ENCSR000EEG, ENCSR000BLS, GSE55407, ENCSR000BTQ, ENCSR167MTG, ENCSR054FKH, ENCSR153HNT, GSE83726
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Cell type: MCF-7, Fibroblast, HCT-116, RH4, Hep-G2, THP-1, DKO, K-562, OCI-AML-3, HFFc6, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 9% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
57% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"14_ReprPCWk": 21%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): CBS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops