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Basic information

CohesinDB ID: CDBP00420637

Locus: chr21-43180997-43181922

Data sourse: GSE206145, GSE206145-NatGen2015, ENCSR198ZYJ, GSE86191

Cell type: Neurons-H1, Fibroblast, HCT-116, RPE

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: False

Compartment: 57% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 59%, "7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: .

Target gene symbol (double-evidenced CRMs): CBS,TFF1,PKNOX1,PDXK,WDR4,AGPAT3,CFAP410,TMPRSS3,RRP1B,TFF2,TRAPPC10,ABCG1,CSTB,TRPM2,NDUFV3,HSF2BP,SLC37A1,PDE9A,PFKL

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 7

Related genes and loops

Related gene: ENSG00000160179, ENSG00000160181, ENSG00000160182, ENSG00000160183, ENSG00000160190, ENSG00000160191, ENSG00000160193, ENSG00000160194, ENSG00000160199, ENSG00000160200, ENSG00000160207, ENSG00000160208, ENSG00000160209, ENSG00000160213, ENSG00000160216, ENSG00000160218, ENSG00000141959, ENSG00000160226, ENSG00000142185,

eachgene

Deatailed information for cohesin site CDBP00420637