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Basic information

CohesinDB ID: CDBP00420644

Locus: chr21-43205526-43206063

Data sourse: GSE67783, GSE86191, GSE206145, GSE206145-NatGen2015, ENCSR153HNT

Cell type: RPE, Fibroblast, HCT-116, K-562, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.944

Subunit: SA1,Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 57% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 54%, "14_ReprPCWk": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZFX, SP140, WT1, MAZ, CTCF, AHR

Target gene symbol (double-evidenced CRMs): TFF1,TMPRSS2,TFF2,CSTB,TMPRSS3,WDR4,NDUFV3,PDXK,PDE9A,HSF2BP,TRAPPC10,PKNOX1,DNMT3L,MX2,TRPM2,RRP1B

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene: ENSG00000183486, ENSG00000184012, ENSG00000160181, ENSG00000160182, ENSG00000160183, ENSG00000160191, ENSG00000160193, ENSG00000160194, ENSG00000160199, ENSG00000160207, ENSG00000160208, ENSG00000160209, ENSG00000160213, ENSG00000160218, ENSG00000142182, ENSG00000142185,

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Deatailed information for cohesin site CDBP00420644