- Basic information
- CohesinDB ID: CDBP00420664
- Locus: chr21-43379100-43382737
-
Data sourse: GSE93080, ENCSR000DZP, GSE67783, GSE86191, GSE111913, GSE206145, GSE206145-NatGen2015, ENCSR000BMY, GSE116344, GSE131606, GSE50893
-
Cell type: RPE, GM12892, GM18526, Fibroblast, HCT-116, RH4, SNYDER, GM2610, GM12878, GM12891, GM2588, GM12890, RT-112, GM2255, GM19239, HSPC, GM18486, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.800
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
65% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 29%,
"7_Enh": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 18
- Related genes and loops
- Related gene:
- Related loop:
chr21:41000000-41025000~~chr21:43350000-43375000,
chr21:41350000-41375000~~chr21:43350000-43375000,
chr21:41650000-41675000~~chr21:43350000-43375000,
chr21:41700000-41725000~~chr21:43350000-43375000,
chr21:42050000-42075000~~chr21:43350000-43375000,
chr21:42225000-42250000~~chr21:43350000-43375000,
chr21:42675000-42700000~~chr21:43350000-43375000,
chr21:42850000-42875000~~chr21:43350000-43375000,
chr21:42875000-42900000~~chr21:43350000-43375000,
chr21:42900000-42925000~~chr21:43350000-43375000,
chr21:42925000-42950000~~chr21:43350000-43375000,
chr21:42975000-43000000~~chr21:43350000-43375000,
chr21:43000000-43025000~~chr21:43350000-43375000,
chr21:43025000-43050000~~chr21:43350000-43375000,
chr21:43175000-43200000~~chr21:43350000-43375000,
chr21:43200000-43225000~~chr21:43350000-43375000,
chr21:43350000-43375000~~chr21:43475000-43500000,
chr21:43350000-43375000~~chr21:43575000-43600000,
chr21:43350000-43375000~~chr21:43600000-43625000,
chr21:43350000-43375000~~chr21:43625000-43650000,
chr21:43350000-43375000~~chr21:43650000-43675000,
chr21:43350000-43375000~~chr21:43700000-43725000,
chr21:43350000-43375000~~chr21:43725000-43750000,
chr21:43350000-43375000~~chr21:43750000-43775000,
chr21:43350000-43375000~~chr21:43775000-43800000,
chr21:43350000-43375000~~chr21:43875000-43900000,
chr21:43350000-43375000~~chr21:43900000-43925000,
chr21:43350000-43375000~~chr21:43925000-43950000,
chr21:43350000-43375000~~chr21:43950000-43975000,
chr21:43350000-43375000~~chr21:43975000-44000000,
chr21:43350000-43375000~~chr21:44000000-44025000,
chr21:43350000-43375000~~chr21:44025000-44050000,
chr21:43350000-43375000~~chr21:44050000-44075000,
chr21:43350000-43375000~~chr21:44250000-44275000,
chr21:43350000-43375000~~chr21:44275000-44300000,
chr21:43350000-43375000~~chr21:44300000-44325000,
chr21:43350000-43375000~~chr21:44325000-44350000,
chr21:43350000-43375000~~chr21:44375000-44400000,
chr21:43350000-43375000~~chr21:44425000-44450000,
chr21:43350000-43375000~~chr21:44450000-44475000,
chr21:43350000-43375000~~chr21:44725000-44750000,
chr21:43350000-43375000~~chr21:44775000-44800000,
chr21:43350000-43375000~~chr21:44800000-44825000,
chr21:43350000-43375000~~chr21:44925000-44950000,
chr21:43350000-43375000~~chr21:45075000-45100000,
chr21:43350000-43375000~~chr21:45325000-45350000,
chr21:43350000-43375000~~chr21:45350000-45375000,
chr21:43350000-43375000~~chr21:45450000-45475000,
chr21:6100000-6125000~~chr21:43350000-43375000,
chr21:6125000-6150000~~chr21:43350000-43375000,
chr21:6150000-6175000~~chr21:43350000-43375000,
chr21:6150000-6175000~~chr21:43375000-43400000,
chr21:6550000-6575000~~chr21:43350000-43375000,