- Basic information
- CohesinDB ID: CDBP00420665
- Locus: chr21-43383053-43384781
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE67783, GSE131956, GSE72082, GSE86191, GSE98367, GSE206145, GSE206145-NatGen2015, ENCSR198ZYJ, ENCSR153HNT, GSE83726, GSE126755, ENCSR917QNE
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Cell type: RPE, H1-hESC, Fibroblast, HCT-116, RH4, Hep-G2, Neurons-H1, GBM39, K-562, Liver, Neutrophil, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.856
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
65% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 29%,
"15_Quies": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops