- Basic information
- CohesinDB ID: CDBP00420683
- Locus: chr21-43449516-43454000
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Data sourse: ENCSR230ZWH, GSE67783, GSE86191, GSE138405, GSE111913, ENCSR000BLY, GSE206145, GSE206145-NatGen2015, ENCSR000EHX, GSE68388, GSE116344, GSE131606, ENCSR917QNE
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Cell type: RPE, Hela-Kyoto, Fibroblast, HCT-116, RH4, SK-N-SH, RT-112, Liver, HSPC, HuCC-T1, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
65% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 24%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): HSF2BP
- Function elements
- Human SNPs: Velopharyngeal_dysfunction
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops