- Basic information
- CohesinDB ID: CDBP00420685
- Locus: chr21-43455344-43464297
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, ENCSR230ZWH, GSE72082, GSE126634, GSE116868, ENCSR000BLY, ENCSR150EFU, GSE105028, GSE131606, GSE25021, GSE115602, ENCSR917QNE, ENCSR000BTU, GSE93080, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE101921, GSE135093, GSE206145-NatGen2015, GSE120943, GSE112028, GSE130135, GSE116344, GSE106870, GSE145327, GSE115248, GSE98367, GSE206145, ENCSR000ECE, GSE97394, GSE131956, GSE110061, GSE129526, ENCSR000HPG, GSE111913, ENCSR153HNT, GSE68388, GSE83726, GSE126990, GSE50893, GSE38411
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Cell type: RH4, GM2610, CVB-hiPSC, HSPC, Liver, HuCC-T1, H9-hESC, RPE, Fibroblast, Ishikawa, Kelly, IMR-90, BCBL-1, K-562, DKO, H1-hESC, Monocytes, MB157, GM12878, GBM39, SK-N-SH, GM19239, HeLa-Tet-On, RT-112, Macrophage, HUES64, MCF-7, GM12892, Hela-Kyoto, HCT-116, HEK293T, Hep-G2, A-549, HCAEC, HAP1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 17% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.611
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,TES,Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
65% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 34%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 40
- Related genes and loops