- Basic information
- CohesinDB ID: CDBP00420688
- Locus: chr21-43467085-43468179
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Data sourse: GSE67783, GSE72082, GSE98367, GSE110061, GSE116868, GSE206145-NatGen2015, ENCSR054FKH, GSE120943, ENCSR153HNT, GSE25021, GSE50893
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Cell type: MCF-7, Fibroblast, HCT-116, Monocytes, Hep-G2, MB157, GM12891, K-562, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
65% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 47%,
"5_TxWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, ZNF195, ZNF621, NME2, PATZ1, SUZ12, ZFHX2, HDGF, ATF3, NFIC, RUNX3, CBFB, PAX5, ZSCAN4, CDC5L, JMJD1C, MAF, LMO2, OCA2, ZNF571, ZIK1, CTCF, TCF12, E4F1, GLI4, ZNF410, ZNF776, EED, POU2F2, ZNF239, RUNX1T1, ZSCAN21, MTA2, ZBTB48, SRF, ZNF488, DDX5, NBN, ARID3A, ZNF300, ZNF2, STAT3, ZNF398, IKZF1, ZNF639, HNRNPL, HES1, HDAC2, SSRP1, GATAD2B, ZNF146, FLI1, ZNF785, SALL2, RUNX1, SMC1A, ZNF707, CRY1, ZNF473, ERG3, TRIM22, ZNF18, RUNX2, KLF9, GSPT2, PHF20, TCF3, BCOR, MLLT1, ZNF662, TARDBP, ZNF148, ZNF521, ZNF311, TAL1, ZNF544, ZNF791, KDM5B, IRF5, TP53, BCL6B, EGR2, BHLHE40, HSF1, IKZF2, BRD4, CLOCK, ZSCAN23
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 14
- Related genes and loops