- Basic information
- CohesinDB ID: CDBP00420700
- Locus: chr21-43485409-43486817
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Data sourse: ENCSR000BTQ, ENCSR230ZWH, GSE72082, GSE86191, GSE116344, GSE25021, GSE111913, GSE76893, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, ENCSR000EDE, GSE68388, GSE83726, ENCSR703TNG, GSE131606, GSE108869, ENCSR000ECS, ENCSR917QNE
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Cell type: MCF-7, RPE, Fibroblast, HCT-116, RH4, HeLa-S3, RT-112, K-562, Liver, HuCC-T1, DKO
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
65% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 47%,
"7_Enh": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): HSF2BP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops