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Basic information

CohesinDB ID: CDBP00420734

Locus: chr21-43616172-43617037

Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT, GSE165895

Cell type: K-562, Fibroblast, HSPC, HFFc6

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,SA2,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 70% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 82%, "5_TxWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: AR, IRF1, FOS, ZNF384, POU2F2, NCOA3, RUNX2, FOXA2, NEUROG2, ZFX, XBP1, PBX4, BRD4, HIF1A, FOXA1, MYOD1, TAL1, ZHX2, ZNF143, YY1

Target gene symbol (double-evidenced CRMs): HSF2BP,PKNOX1,NDUFV3,SLC37A1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 9

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000160190, ENSG00000160194, ENSG00000160199, ENSG00000160207,

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Deatailed information for cohesin site CDBP00420734