- Basic information
- CohesinDB ID: CDBP00420750
- Locus: chr21-43650183-43650609
-
Data sourse: GSE67783, GSE98367, GSE111913, ShirahigeLab, ShirahigeLab-NatGen2015
-
Cell type: RPE, Fibroblast, RT-112, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
70% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 77%,
"5_TxWk": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZBTB48, ZNF384
- Target gene symbol (double-evidenced CRMs): PFKL,UMODL1,UBE2G2,CSTB,TRPM2,CBS,NDUFV3,WDR4,HSF2BP,PDXK,PKNOX1,CFAP410
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000177398,
ENSG00000160193,
ENSG00000160194,
ENSG00000160199,
ENSG00000160200,
ENSG00000160207,
ENSG00000160209,
ENSG00000160213,
ENSG00000141959,
ENSG00000160226,
ENSG00000142185,
ENSG00000184787,
- Related loop:
chr21:42125000-42150000~~chr21:43650000-43675000,
chr21:42150000-42175000~~chr21:43625000-43650000,
chr21:42575000-42600000~~chr21:43625000-43650000,
chr21:42600000-42625000~~chr21:43625000-43650000,
chr21:42600000-42625000~~chr21:43650000-43675000,
chr21:42800000-42825000~~chr21:43625000-43650000,
chr21:42806064-42807428~~chr21:43644880-43647795,
chr21:42850000-42875000~~chr21:43650000-43675000,
chr21:42850088-42851920~~chr21:43644933-43647734,
chr21:42850353-42851585~~chr21:43645063-43647595,
chr21:42875000-42900000~~chr21:43625000-43650000,
chr21:42875000-42900000~~chr21:43650000-43675000,
chr21:42900000-42925000~~chr21:43625000-43650000,
chr21:42900000-42925000~~chr21:43650000-43675000,
chr21:42922609-42925287~~chr21:43644896-43647868,
chr21:42922692-42925178~~chr21:43644727-43647870,
chr21:42922930-42925162~~chr21:43644933-43647734,
chr21:42922962-42925091~~chr21:43644228-43647626,
chr21:42922972-42925217~~chr21:43644939-43647696,
chr21:42923020-42925261~~chr21:43644178-43647643,
chr21:42925000-42950000~~chr21:43625000-43650000,
chr21:42925000-42950000~~chr21:43650000-43675000,
chr21:42975000-43000000~~chr21:43650000-43675000,
chr21:43000000-43025000~~chr21:43625000-43650000,
chr21:43000000-43025000~~chr21:43650000-43675000,
chr21:43025000-43050000~~chr21:43650000-43675000,
chr21:43175000-43200000~~chr21:43625000-43650000,
chr21:43175000-43200000~~chr21:43650000-43675000,
chr21:43200000-43225000~~chr21:43625000-43650000,
chr21:43200000-43225000~~chr21:43650000-43675000,
chr21:43209337-43212050~~chr21:43644682-43647799,
chr21:43209386-43212601~~chr21:43644722-43647651,
chr21:43210267-43212835~~chr21:43644178-43647643,
chr21:43210279-43212712~~chr21:43644144-43647779,
chr21:43275000-43300000~~chr21:43625000-43650000,
chr21:43300000-43325000~~chr21:43625000-43650000,
chr21:43300000-43325000~~chr21:43650000-43675000,
chr21:43325000-43350000~~chr21:43625000-43650000,
chr21:43325000-43350000~~chr21:43650000-43675000,
chr21:43342049-43344350~~chr21:43645041-43647656,
chr21:43350000-43375000~~chr21:43625000-43650000,
chr21:43350000-43375000~~chr21:43650000-43675000,
chr21:43425000-43450000~~chr21:43625000-43650000,
chr21:43475000-43500000~~chr21:43625000-43650000,
chr21:43610740-43612903~~chr21:43644956-43647859,
chr21:43611033-43612871~~chr21:43645066-43647744,
chr21:43611046-43612875~~chr21:43644727-43647870,
chr21:43611054-43612862~~chr21:43644979-43647872,
chr21:43611060-43612869~~chr21:43644944-43647839,
chr21:43611069-43612877~~chr21:43644732-43647818,
chr21:43611293-43612797~~chr21:43644991-43647619,
chr21:43611315-43614495~~chr21:43644986-43647633,
chr21:43613276-43614563~~chr21:43645000-43647610,
chr21:43650000-43675000~~chr21:43750000-43775000,
chr21:43650000-43675000~~chr21:44325000-44350000,
chr21:43650000-43675000~~chr21:44775000-44800000,
chr21:6075000-6100000~~chr21:43625000-43650000,
chr21:6100000-6125000~~chr21:43625000-43650000,
chr21:6100000-6125000~~chr21:43650000-43675000,
chr21:6125000-6150000~~chr21:43625000-43650000,
chr21:6425000-6450000~~chr21:43625000-43650000,
chr21:6500000-6525000~~chr21:43625000-43650000,
chr21:6550000-6575000~~chr21:43625000-43650000,
chr21:6550000-6575000~~chr21:43650000-43675000,