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Basic information

CohesinDB ID: CDBP00420755

Locus: chr21-43663113-43663746

Data sourse: GSE50893, GSE67783, ENCSR153HNT

Cell type: K-562, HSPC, GM2588

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 70% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "5_TxWk": 50%, "4_Tx": 39%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZBTB2, HDGF, MAF, NEUROD1, JUNB, BCLAF1, MYB, RUNX3, PRDM1, ARNT, SKIL, ZFX, BATF, RBFOX2, PAX5, MLLT1, TBX21, YY1

Target gene symbol (double-evidenced CRMs): CFAP410,CSTB,UBE2G2,CBS,PFKL,UMODL1,PKNOX1,WDR4,NDUFV3,TRPM2,PDXK,RRP1B,HSF2BP

Function elements

Human SNPs: .

Number of somatic mutations (coding): 1

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000177398, ENSG00000160193, ENSG00000160194, ENSG00000160199, ENSG00000160200, ENSG00000160207, ENSG00000160208, ENSG00000160209, ENSG00000160213, ENSG00000141959, ENSG00000160226, ENSG00000142185, ENSG00000184787,

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Deatailed information for cohesin site CDBP00420755