- Basic information
- CohesinDB ID: CDBP00420757
- Locus: chr21-43667345-43668735
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Data sourse: ENCSR167MTG, ENCSR338DUC, ENCSR230ZWH, GSE67783, GSE72082, GSE165895, GSE86191, ENCSR000HPG, ENCSR000BLS, GSE206145-NatGen2015, ENCSR054FKH, ENCSR153HNT, GSE138105, GSE25021, ENCSR917QNE
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Cell type: Fibroblast, HCT-116, Hep-G2, SLK, IMR-90, K-562, Liver, HSPC, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SMC1,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
70% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 71%,
"4_Tx": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, ZSCAN5C, SOX2, FOXA1, RBFOX2, PBX2, RXRB, MLL4, ZFHX2, KDM3A, HDGF, ATF3, NFIC, RUNX3, ATF4, CBFB, GLYR1, PAX5, BACH2, JMJD1C, TEAD1, TRIM28, ZNF121, BCLAF1, RCOR2, ESR1, TP73, USF2, CTCF, JUN, TCF12, EP300, KLF1, ZNF695, SOX5, IRF4, ZNF528, FOXA3, ZNF175, GATAD2A, EED, GLIS1, POU2F2, MYCN, MTA2, DUX4, ZSCAN5A, STAT1, ZBTB48, SAP130, ERG2, ARID3A, HNF4G, HOXC5, PBX1, ETS1, MYC, ONECUT1, RAD21, GRHL3, RXRA, PROX1, NKX2-1, BATF3, STAT3, ZNF614, IKZF1, MIER3, DNMT3B, NR2F6, VDR, NR3C1, CEBPB, KMT2A, CREB1, GRHL2, ZHX2, SPI1, MIXL1, HDAC2, FLI1, ZGPAT, NFIL3, ZNF554, RUNX1, SMC1A, MAFG, CEBPA, SOX13, ZFX, SMAD3, ERG3, TBX3, SP5, MYBL2, RARA, ZNF384, ZNF35, RUNX2, DAXX, NRF1, ATF2, ZNF518A, SMAD4, PBX3, FOXM1, SUPT5H, ZNF484, CDK8, FOS, MED1, TEAD3, CEBPD, ZNF680, ZMYM3, ZNF3, C11orf30, TBX5, SREBF2, SETDB1, STAT5A, RBM22, MAFK, SP1, BCL11A, HNF4A, IKZF5, ATF7, ZNF543, TCF3, FOXP1, SMC3, MLLT1, STAG1, SKI, MEF2B, ZNF316, FOXA2, PPARG, EBF1, MEIS1, PAF1, NFATC1, ZNF600, ZNF692, GTF2B, WT1, MAFF, ESR2, MIER2, ZBTB33, MEF2C, HOXB13, BCL3, KDM1A, YY1, RELA, TARDBP, NEUROD1, JUNB, OTX2, GATA3, BATF, TAL1, MAX, NRIP1, AGO2, CEBPG, NCOA3, NR2F2, NR2F1, TP53, ZBTB6, MED, NFKB1, EGR2, PHF5A, ELF3, KAT8, TBX21, BHLHE40, AR, ARID4B, IKZF2, SCRT1, BRD4, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): PFKL,WDR4,PKNOX1,UMODL1,NDUFV3,RRP1B,PDXK,CBS,CSTB,UBE2G2,CFAP410,TRPM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 5
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000177398,
ENSG00000160193,
ENSG00000160194,
ENSG00000160199,
ENSG00000160200,
ENSG00000160208,
ENSG00000160209,
ENSG00000160213,
ENSG00000141959,
ENSG00000160226,
ENSG00000142185,
ENSG00000184787,
- Related loop:
chr21:42125000-42150000~~chr21:43650000-43675000,
chr21:42600000-42625000~~chr21:43650000-43675000,
chr21:42850000-42875000~~chr21:43650000-43675000,
chr21:42875000-42900000~~chr21:43650000-43675000,
chr21:42900000-42925000~~chr21:43650000-43675000,
chr21:42925000-42950000~~chr21:43650000-43675000,
chr21:42975000-43000000~~chr21:43650000-43675000,
chr21:43000000-43025000~~chr21:43650000-43675000,
chr21:43025000-43050000~~chr21:43650000-43675000,
chr21:43175000-43200000~~chr21:43650000-43675000,
chr21:43200000-43225000~~chr21:43650000-43675000,
chr21:43300000-43325000~~chr21:43650000-43675000,
chr21:43325000-43350000~~chr21:43650000-43675000,
chr21:43350000-43375000~~chr21:43650000-43675000,
chr21:43650000-43675000~~chr21:43750000-43775000,
chr21:43650000-43675000~~chr21:44325000-44350000,
chr21:43650000-43675000~~chr21:44775000-44800000,
chr21:6100000-6125000~~chr21:43650000-43675000,
chr21:6550000-6575000~~chr21:43650000-43675000,