- Basic information
- CohesinDB ID: CDBP00420768
- Locus: chr21-43683749-43684802
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Data sourse: GSE67783, GSE86191, GSE101921, GSE206145-NatGen2015, ENCSR153HNT, ENCSR917QNE
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Cell type: Fibroblast, HCT-116, HCAEC, K-562, Liver, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
70% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 79%,
"5_TxWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NFIA, CEBPA, POU5F1, PAF1, ZFX, ZBTB48, ZSCAN5A, STAT1, ESR2, FOXA1, ERG, RELA, ZNF384, ZNF90, ETS1, MYC, RAD21, SP140, NKX2-1, GLYR1, GABPA, STAT3, TAL1, NRIP1, SUPT5H, CDK8, SP2, DNMT3B, NR3C1, KLF4, TEAD3, ETV1, NEUROG2, CREB1, TP53, ESR1, MED26, ZNF334, ZNF652, JUN, RBM22, CTCF, SPI1, FLI1, SMC1, ZIM3, AHR
- Target gene symbol (double-evidenced CRMs): PKNOX1,RRP1B,WDR4,DNMT3L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 20
- Number of somatic mutations (non-coding): 20
- Related genes and loops