- Basic information
- CohesinDB ID: CDBP00420787
- Locus: chr21-43784528-43784755
-
Data sourse: ENCSR153HNT, GSE72082
-
Cell type: K-562, MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
79% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 51%,
"5_TxWk": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: KLF13, ID3, ZFX, ZNF589, YY1, PBX4, ZNF48, STAT3, TP63, NR2C1, FOS, MIER3, ZNF592, TEAD3, ZKSCAN8, E2F5, ZBTB11, BCL11A, KLF1, NR4A1, PTRF, CREB3, ZBTB26, ZNF175, ZNF395
- Target gene symbol (double-evidenced CRMs): TRAPPC10,WDR4,RRP1,NDUFV3,PFKL
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000160193,
ENSG00000160194,
ENSG00000160214,
ENSG00000160218,
ENSG00000141959,
- Related loop:
chr21:42875000-42900000~~chr21:43775000-43800000,
chr21:43350000-43375000~~chr21:43775000-43800000,
chr21:43717830-43720923~~chr21:43788650-43790245,
chr21:43718134-43720810~~chr21:43788562-43790300,
chr21:43727966-43729871~~chr21:43788671-43790700,
chr21:43775000-43800000~~chr21:44000000-44025000,
chr21:43775000-43800000~~chr21:44275000-44300000,
chr21:43775010-43777246~~chr21:43788671-43790700,
chr21:43775246-43777294~~chr21:43788686-43790650,
chr21:43788328-43790829~~chr21:43804831-43806258,
chr21:43788506-43790376~~chr21:43804838-43806274,