- Basic information
- CohesinDB ID: CDBP00420795
- Locus: chr21-43838775-43839950
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Data sourse: GSE67783, GSE86191, GSE206145-NatGen2015, ENCSR153HNT, GSE50893
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Cell type: Fibroblast, HCT-116, GM2610, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
79% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 50%,
"14_ReprPCWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, POU2F2, CEBPA, FOXA2, CREM, MEIS2, CTBP1, MTA2, ZFX, WT1, ZBTB33, NBN, PBX2, TRIM22, TBP, RELA, HDGF, TARDBP, NFKB2, NFIC, MYC, RUNX3, ZNF24, ARNT, SKIL, BACH1, BATF, MAX, PAX5, IKZF1, CEBPG, CEBPB, ZEB1, NR2F1, SMAD1, EZH2, ZNF217, PKNOX1, OCA2, NFKB1, MYOD1, CTCF, TCF12, BCL11A, TBX21, BHLHE40, DPF2, HDAC2, GATAD2B, SIX2, IKZF2, SMARCA5, TCF3, RELB, NFIL3, GTF2F1, MLLT1, DMAP1
- Target gene symbol (double-evidenced CRMs): TRAPPC10,DNMT3L,CFAP410,TSPEAR,PFKL,AGPAT3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
ENSG00000160216,
ENSG00000160218,
ENSG00000142182,
ENSG00000141959,
ENSG00000160226,
ENSG00000175894,
- Related loop:
chr21:43825000-43850000~~chr21:43925000-43950000,
chr21:43825000-43850000~~chr21:43950000-43975000,
chr21:43825000-43850000~~chr21:44075000-44100000,
chr21:43825000-43850000~~chr21:44250000-44275000,
chr21:43825000-43850000~~chr21:44275000-44300000,
chr21:43825000-43850000~~chr21:44300000-44325000,
chr21:43825000-43850000~~chr21:44475000-44500000,
chr21:5125000-5150000~~chr21:43825000-43850000,