- Basic information
- CohesinDB ID: CDBP00420801
- Locus: chr21-43849633-43862147
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Data sourse: ENCSR000BLD, GSE72082, ENCSR000FAD, ENCSR000BSB, GSE116868, ENCSR000EGW, ENCSR000BLY, GSE105028, GSE103477, GSE111537, GSE131606, GSE108869, GSE25021, GSE165895, GSE93080, ENCSR000DZP, ENCSR000EAC, GSE143937, ENCSR000BKV, GSE67783, GSE138405, GSE86191, GSE76893, GSE101921, GSE206145-NatGen2015, GSE120943, GSE112028, ENCSR703TNG, GSE106870, GSE116344, GSE145327, GSE94872, ENCSR000EEG, ENCSR338DUC, GSE98367, ENCSR879KXD, ENCSR000BLS, GSE206145, ENCSR000ECE, ENCSR000BMY, ENCSR000EHX, GSE97394, GSE55407, ENCSR000BTQ, ENCSR167MTG, GSE129526, ENCSR000HPG, GSE111913, GSE155324, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE83726, GSE50893, ENCSR000ECS, GSE38411
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Cell type: RH4, GM10847, GM2610, CVI-hiPSC, HuCC-T1, H9-hESC, RPE, GM2630, Fibroblast, HeLa-S3, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, H1-hESC, Monocytes, GM18505, MB157, Lymphoblast, GM12878, GM2588, SK-N-SH, GM19239, HeLa-Tet-On, RT-112, THP-1, GM19099, HUES64, Macrophage, GM12892, MCF-7, Hela-Kyoto, HCT-116, Hep-G2, HUVEC, HCAEC, GM19238, OCI-AML-3, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 24% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.533
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,TES,Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
79% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 23%,
"15_Quies": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, TRIM25, PGR, TRP47, MYCN, ZFX, ZBTB48, WT1, STAT1, FOXA1, TET2, HOXB13, ERG, CREBBP, ATF3, MYC, SP140, HIF1A, NRIP1, SMARCB1, CDK8, ZNF736, KLF4, ZNF592, KMT2A, ETV1, NR2F1, ZNF3, ESR1, ZBTB6, ZNF334, CTCF, SPI1, KLF1, BAF155, BCL11A, REST, MAZ, AATF, TEAD4, STAG1
- Target gene symbol (double-evidenced CRMs): PFKL,TSPEAR,DNMT3L,AGPAT3,PDXK,CSTB,TRAPPC10,CFAP410
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 69
- Related genes and loops
- Related gene:
ENSG00000160209,
ENSG00000160213,
ENSG00000160216,
ENSG00000160218,
ENSG00000142182,
ENSG00000141959,
ENSG00000160226,
ENSG00000175894,
- Related loop:
chr21:43175000-43200000~~chr21:43850000-43875000,
chr21:43300000-43325000~~chr21:43850000-43875000,
chr21:43750000-43775000~~chr21:43850000-43875000,
chr21:43816236-43819381~~chr21:43853544-43855897,
chr21:43825000-43850000~~chr21:43925000-43950000,
chr21:43825000-43850000~~chr21:43950000-43975000,
chr21:43825000-43850000~~chr21:44075000-44100000,
chr21:43825000-43850000~~chr21:44250000-44275000,
chr21:43825000-43850000~~chr21:44275000-44300000,
chr21:43825000-43850000~~chr21:44300000-44325000,
chr21:43825000-43850000~~chr21:44475000-44500000,
chr21:43850000-43875000~~chr21:43975000-44000000,
chr21:43850000-43875000~~chr21:44000000-44025000,
chr21:43850000-43875000~~chr21:44075000-44100000,
chr21:43850000-43875000~~chr21:44250000-44275000,
chr21:43863007-43867607~~chr21:43937376-43940406,
chr21:43863838-43866560~~chr21:43974421-43976456,
chr21:43863845-43866538~~chr21:43938251-43940531,
chr21:43864564-43867617~~chr21:43938189-43940198,
chr21:43864603-43867554~~chr21:43938179-43940032,
chr21:43864707-43867527~~chr21:43916051-43918979,
chr21:43864776-43867606~~chr21:43974787-43976435,
chr21:43864816-43867524~~chr21:43937351-43940350,
chr21:43864879-43867702~~chr21:43938102-43940319,
chr21:5125000-5150000~~chr21:43825000-43850000,