- Basic information
- CohesinDB ID: CDBP00420812
- Locus: chr21-43881940-43886603
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Data sourse: GSE206145-GSE177045, GSE104888, ENCSR230ZWH, GSE72082, ENCSR000BSB, GSE116868, GSE131606, GSE108869, GSE25021, ENCSR000EAC, GSE143937, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE101921, GSE206145-NatGen2015, GSE120943, GSE130135, ENCSR703TNG, ENCSR338DUC, ENCSR879KXD, ENCSR000BLS, GSE206145, ENCSR000BTQ, ENCSR167MTG, GSE110061, GSE129526, GSE111913, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE50893, ENCSR000ECS, GSE38411
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Cell type: Liver, HuCC-T1, RPE, HMEC, Fibroblast, HeLa-S3, GM2255, K-562, BCBL-1, Monocytes, MB157, GM12878, RT-112, MCF-7, Hela-Kyoto, HCT-116, MCF-10A, HEK293T, Hep-G2, HCAEC, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 12% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.756
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
79% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 49%,
"7_Enh": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOXA1, HLF, RXRB, MLL4, KDM3A, HDGF, IKZF3, PAX5, TEAD1, LMO2, OCA2, HDAC8, E4F1, SOX5, E2F4, ZNF410, GATAD2A, ZNF263, POU5F1, CTBP1, STAT1, SAP130, ERG, SMARCA4, FOXK2, ZNF398, RCOR1, NR2F6, NFRKB, DACH1, CEBPB, HNRNPL, CREB1, GABPB1, ZHX2, MIXL1, KLF17, GATA2, ZNF644, MXD3, FLI1, DRAP1, NR2C2, MXI1, HCFC1, EP400, RUNX1, HDAC1, CEBPA, NKX2-2, TET2, SP5, PRDM10, ZBTB2, ZBTB10, ATF2, FOXM1, SMARCB1, GMEB1, PML, SMAD1, NR1H2, C11orf30, EVI1, STAT5A, IKZF5, AFF1, MBD2, NFATC3, CBFA2T2, CBX3, CREM, CHD2, PAF1, WT1, JUNB, NEUROD1, ZFP36, TCF4, BATF, MAF1, PLAG1, ZFP69B, KLF4, EGR2, ELF3, RBM14, ARID4B, RXR, ZNF366, HSF1, ZBTB26, NCOR1, SCRT1, ILF3, ZNF316, FOSL1, XBP1, KDM4B, PBX2, HNRNPK, ATF3, THRB, ZFP64, RUNX3, CBFB, TP63, MITF, BACH2, ZNF467, MAF, JMJD1C, ELF1, RBM39, SNAI2, KLF10, SMAD5, CTCF, JUN, ZBTB20, MNT, DPF2, ZNF423, DDX20, PDX1, TFAP2C, RBPJ, MLX, ZSCAN21, ZBTB17, ZBTB48, MTA2, NONO, SRF, DDX5, NBN, PHB2, HOMEZ, RXRA, NKX3-1, LEF1, MIER3, NR3C1, ESRRA, KMT2A, CCAR2, TBL1XR1, KLF8, ZNF146, ZSCAN29, SMARCA5, NFIL3, CC2D1A, THAP11, CTNNB1, LDB1, SOX13, ZNF770, ZNF513, ZMIZ1, ZNF18, ARNT, DAXX, BACH1, ZNF48, ZEB2, HMBOX1, NFYA, ETV6, NCAPH2, HMGXB4, TEAD3, KLF9, USF1, SP1, TFAP2A, BCL11A, ZNF479, ATF7, ASH2L, GLIS2, SMC3, STAG1, MLLT1, STAG2, ZNF394, TRP47, AGO1, MTA3, EBF1, MAFF, ZNF580, ZKSCAN1, KDM1A, ZIC2, GATA3, KLF15, TAL1, NRIP1, ZNF143, AGO2, MTA1, CBX2, TP53, ZNF334, NFKB1, ZSCAN22, BRD2, KAT8, TBX21, EGR1, RB1, TFIIIC, RNF2, IKZF2, BRD4, JUND, CUX1, ZSCAN23, IRF9, ZFP42, PGR, CBX5, PATZ1, UBTF, TFAP4, ATF4, MXD4, ZNF189, SMARCE1, KLF6, NFE2L2, ESR1, KLF1, E2F6, TRIM24, RFX5, GTF2F1, GLIS1, CDK9-HEXIM1, POU2F2, ZSCAN5A, ERG2, SP4, TBP, HNF4G, HOXC5, OGG1, SMARCC2, ETS1, MYC, ARID1B, NKX2-1, GABPA, STAT3, IKZF1, DNMT3B, SRSF3, ZNF652, PHF8, SPI1, PCBP1, HDAC2, GATAD2B, NFYB, ETV5, BCL6, SIN3A, NFXL1, ERG3, RARA, ZNF35, CREBBP, ZNF384, NFYC, TAF15, SMAD4, CBFA2T3, CDK8, ZEB1, ZMYM3, NCOA1, RBM22, MAFK, HNF4A, NR4A1, REST, HNRNPLL, BCOR, FOXP1, AATF, NCOR2, PPARG, TBL1X, ZNF692, ZNF574, TCF7, RELA, TARDBP, MAX, ZNF592, GFI1B, NR2F1, TCF7L2, KDM5B, PKNOX1, T, AR, ZNF324, HEXIM1, AHR, FOSL2, DMAP1, HMG20A, MEIS2, RBFOX2, ZNF28, ZFHX2, LYL1, NFIC, PRDM1, MECOM, CDX2, ZNF629, KLF5, TRIM28, RCOR2, ZFP91, TCF12, BAF155, EP300, GATA6, PRDM4, SOX6, SMC1, TEAD4, FOXA3, ZNF175, EED, CHD8, MYCN, RUNX1T1, ID3, GATAD1, ARID3A, MIER1, RAD21, GRHL3, PROX1, XRCC5, ZNF614, NFE2, ZNF639, ZNF750, FEZF1, TFE3, IRF1, ZGPAT, MRTFB, ATF1, PTBP1, SMC1A, CBX1, MAFG, FIP1L1, ZFX, SMAD3, PCBP2, NSD2, IRF2, PRPF4, BRD9, GATA4, OSR2, ZNF184, NRF1, PBX4, NR2C1, FOS, SUPT5H, MED1, CEBPD, MYB, SCRT2, KDM6B, VEZF1, ZNF3, L3MBTL2, SETDB1, KLF16, NIPBL, ZBTB7A, POU2F3, PHIP, TCF3, SKI, FOXA2, RBBP5, ZNF600, MIER2, ZBTB33, CDK9, YY1, ZNF148, SP140, HIF1A, OTX2, ZNF449, GATA1, CEBPG, SP7, NCOA3, NR2F2, NFKBIZ, BHLHE40, TAF1, ZBTB40, ZBTB42, MYNN, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): DNMT3L,PDXK,AGPAT3,CSTB
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 34
- Number of somatic mutations (non-coding): 4
- Related genes and loops