- Basic information
- CohesinDB ID: CDBP00420815
- Locus: chr21-43890044-43891619
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Data sourse: ENCSR000BLD, GSE67783, GSE105028, ENCSR000ECE, ENCSR153HNT
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Cell type: K-562, H1-hESC, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
79% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 56%,
"15_Quies": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, POU2F2, HDAC1, TOP2A, CHD2, ZFX, XBP1, ZBTB48, WT1, ZBTB33, KDM1A, YY1, RELA, HDGF, ZNF341, RAD21, CHD7, SMAD4, MAX, PRDM14, IKZF1, ZNF121, EZH2, ESR1, CTCF, RBM22, SP1, E4F1, DPF2, ZBTB7A, E2F6, NCOR1, BRD4, BCOR, MAZ, MLLT1
- Target gene symbol (double-evidenced CRMs): PDXK,CSTB,AGPAT3,DNMT3L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 0
- Related genes and loops