- Basic information
- CohesinDB ID: CDBP00420832
- Locus: chr21-43931599-43933243
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Data sourse: GSE67783, GSE86191, GSE98367, ENCSR404BPV, GSE120943, ENCSR153HNT
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Cell type: HCT-116, Monocytes, Neurons-H1, K-562, HSPC, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SMC1,SA1,Rad21,SMC3
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
79% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 59%,
"15_Quies": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MBD3, FOXO1, PGR, NME2, XBP1, FOXA1, SUZ12, PBX2, ZFHX2, ZBTB7B, HDGF, ZNF90, ATF3, ZNF362, CTCFL, RUNX3, WDHD1, THAP1, ZNF444, DPF1, SMARCE1, PAX5, TP63, ELF1, TRIM28, TEAD1, ETV1, SNAI2, ZNF217, ESR1, LMO2, HDAC8, CTCF, TCF12, SND1, BAF155, EP300, JUN, MNT, DPF2, PRDM4, TRIM24, E2F4, E2F1, NR5A2, TEAD4, GTF2F1, PDX1, TFAP2C, RBPJ, GLIS1, POU2F2, NANOG, MYCN, ZNF263, ID3, CTBP1, MTA2, ZBTB17, ZBTB48, STAT1, DDX5, NBN, ERG2, TBP, HNF4G, ERG, PBX1, OGG1, MYC, RFX1, RAD21, GRHL3, RXRA, GABPA, APC, STAT3, NKX3-1, IKZF1, RCOR1, NFE2, DNMT3B, VDR, NR3C1, ZNF750, SRSF3, CEBPB, ESRRA, KMT2A, CREB1, EZH2, BMPR1A, GRHL2, GABPB1, ZHX2, SPI1, HDAC2, GATA2, GATAD2B, MXD3, SIX2, FLI1, SMARCA5, NCOA2, PTBP1, ETV5, RUNX1, CBX1, SMC1A, HDAC1, MAFG, BCL6, NKX2-2, SIN3A, ZFX, ZNF770, NFXL1, TET2, ERG3, NSD2, CREBBP, ZXDC, PRPF4, TAF15, RUNX2, ARNT, NFIB, ATF2, PRDM9, SMAD4, CBFA2T3, FOXM1, NR2C1, SUPT5H, FOS, MED1, CSNK2A1, TEAD3, SCRT2, ZMYM3, PIAS1, ZNF3, C11orf30, RBM22, MAFK, SP1, TFAP2A, BCL11A, HNF4A, REST, ARID1A, RBM25, ASH2L, HNRNPLL, CTBP2, BCOR, FOXP1, MBD2, TCF3, AATF, SMC3, NCOR2, STAG1, MLLT1, TRP47, CBFA2T2, MEF2B, CBX3, FOXA2, MTA3, EBF1, PAF1, AGO1, ZNF600, CREM, GTF2B, WT1, MAFF, ZBTB33, CDK9, HOXB13, ZKSCAN1, KDM1A, YY1, RELA, TARDBP, AHR, SP140, ZFP36, ZIC2, HIF1A, GATA3, TAL1, MAX, NRIP1, GATA1, ZNF143, AGO2, MTA1, PLAG1, KLF4, NCOA3, NR2F2, ZNF768, NR2F1, KDM5B, ZNF687, PKNOX1, ZNF334, EGR2, PHOX2B, TBX21, BHLHE40, AR, ZNF579, ZBTB40, HEXIM1, RB1, TFIIIC, HSF1, JUND, BRD4, MAZ, ZNF24, ADNP, ZNF316
- Target gene symbol (double-evidenced CRMs): TRAPPC10,AGPAT3,RRP1B,RRP1,PDXK
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 44
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000160208,
ENSG00000160209,
ENSG00000160214,
ENSG00000160216,
ENSG00000160218,
- Related loop:
chr21:43350000-43375000~~chr21:43925000-43950000,
chr21:43700000-43725000~~chr21:43925000-43950000,
chr21:43800000-43825000~~chr21:43925000-43950000,
chr21:43809382-43811979~~chr21:43938102-43940319,
chr21:43809402-43812987~~chr21:43937998-43940483,
chr21:43809567-43812215~~chr21:43938147-43940210,
chr21:43809663-43812024~~chr21:43938130-43940598,
chr21:43809751-43812069~~chr21:43938146-43940360,
chr21:43809780-43812025~~chr21:43937351-43940350,
chr21:43809874-43812232~~chr21:43938166-43940313,
chr21:43809929-43812308~~chr21:43938119-43940276,
chr21:43809936-43811851~~chr21:43938091-43940342,
chr21:43809955-43812182~~chr21:43937376-43940406,
chr21:43809958-43812169~~chr21:43938137-43940345,
chr21:43809981-43812494~~chr21:43937312-43940274,
chr21:43809983-43812004~~chr21:43938179-43940032,
chr21:43809990-43812835~~chr21:43938132-43940331,
chr21:43810024-43812849~~chr21:43938199-43940241,
chr21:43810025-43812953~~chr21:43938174-43940320,
chr21:43810028-43812062~~chr21:43938199-43940196,
chr21:43810035-43812029~~chr21:43928620-43930391,
chr21:43810123-43812202~~chr21:43938189-43940198,
chr21:43810128-43811870~~chr21:43938201-43940161,
chr21:43810178-43811879~~chr21:43938216-43940232,
chr21:43816217-43819598~~chr21:43938102-43940319,
chr21:43825000-43850000~~chr21:43925000-43950000,
chr21:43826555-43827748~~chr21:43938146-43939967,
chr21:43863007-43867607~~chr21:43937376-43940406,
chr21:43864564-43867617~~chr21:43938189-43940198,
chr21:43864603-43867554~~chr21:43938179-43940032,
chr21:43864816-43867524~~chr21:43937351-43940350,
chr21:43864879-43867702~~chr21:43938102-43940319,
chr21:43925000-43950000~~chr21:44025000-44050000,