- Basic information
- CohesinDB ID: CDBP00420859
- Locus: chr21-44008742-44009011
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Data sourse: GSE206145-NatGen2015, GSE67783
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Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 57%,
"5_TxWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, NR3C1, PGR, GR, ZFX, HNRNPLL, FOXA1, ZNF334
- Target gene symbol (double-evidenced CRMs): TRAPPC10,AGPAT3,TRPM2,RRP1,PFKL,TSPEAR,CFAP410,CSTB,PDXK,DNMT3L
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000160209,
ENSG00000160213,
ENSG00000160214,
ENSG00000160216,
ENSG00000160218,
ENSG00000142182,
ENSG00000141959,
ENSG00000160226,
ENSG00000142185,
ENSG00000175894,
- Related loop:
chr21:43300000-43325000~~chr21:44000000-44025000,
chr21:43350000-43375000~~chr21:44000000-44025000,
chr21:43750000-43775000~~chr21:44000000-44025000,
chr21:43775000-43800000~~chr21:44000000-44025000,
chr21:43850000-43875000~~chr21:44000000-44025000,
chr21:44000000-44025000~~chr21:44250000-44275000,
chr21:44000000-44025000~~chr21:44275000-44300000,
chr21:44000000-44025000~~chr21:44325000-44350000,
chr21:44000000-44025000~~chr21:44475000-44500000,
chr21:44011489-44014484~~chr21:44479052-44481021,
chr21:44011649-44014659~~chr21:44065052-44066225,
chr21:5150000-5175000~~chr21:44000000-44025000,