- Basic information
- CohesinDB ID: CDBP00420865
- Locus: chr21-44022967-44023469
-
Data sourse: GSE206145, GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 67%,
"7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF384, EGR1, SNAI2, PHIP, ZNF22, RBM22, YY1
- Target gene symbol (double-evidenced CRMs): TSPEAR,AGPAT3,DNMT3L,CFAP410,RRP1,PDXK,TRAPPC10,PFKL,TRPM2,CSTB
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 2
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000160209,
ENSG00000160213,
ENSG00000160214,
ENSG00000160216,
ENSG00000160218,
ENSG00000142182,
ENSG00000141959,
ENSG00000160226,
ENSG00000142185,
ENSG00000175894,
- Related loop:
chr21:43000000-43025000~~chr21:44025000-44050000,
chr21:43175000-43200000~~chr21:44025000-44050000,
chr21:43200000-43225000~~chr21:44025000-44050000,
chr21:43300000-43325000~~chr21:44000000-44025000,
chr21:43350000-43375000~~chr21:44000000-44025000,
chr21:43350000-43375000~~chr21:44025000-44050000,
chr21:43750000-43775000~~chr21:44000000-44025000,
chr21:43775000-43800000~~chr21:44000000-44025000,
chr21:43850000-43875000~~chr21:44000000-44025000,
chr21:43925000-43950000~~chr21:44025000-44050000,
chr21:44000000-44025000~~chr21:44250000-44275000,
chr21:44000000-44025000~~chr21:44275000-44300000,
chr21:44000000-44025000~~chr21:44325000-44350000,
chr21:44000000-44025000~~chr21:44475000-44500000,
chr21:44025000-44050000~~chr21:44250000-44275000,
chr21:44025000-44050000~~chr21:44275000-44300000,
chr21:44025000-44050000~~chr21:44300000-44325000,
chr21:44025000-44050000~~chr21:44450000-44475000,
chr21:5125000-5150000~~chr21:44025000-44050000,
chr21:5150000-5175000~~chr21:44000000-44025000,