- Basic information
- CohesinDB ID: CDBP00420873
- Locus: chr21-44033569-44033850
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Data sourse: GSE67783, GSE111913, ENCSR153HNT
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Cell type: K-562, RT-112, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 67%,
"5_TxWk": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF384, EGR2, FOXA2, ZSCAN5D, TOP2A, ASH2L, ZSCAN16, BRD4, FOXF1, FOXA1, ZNF770, ZFP91, RBM22, SUPT5H, ZFHX2
- Target gene symbol (double-evidenced CRMs): DNMT3L,AGPAT3,PKNOX1,CFAP410,PFKL,LRRC3,TRAPPC10
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000160199,
ENSG00000160216,
ENSG00000160218,
ENSG00000142182,
ENSG00000141959,
ENSG00000160226,
ENSG00000160233,
- Related loop:
chr21:43000000-43025000~~chr21:44025000-44050000,
chr21:43175000-43200000~~chr21:44025000-44050000,
chr21:43200000-43225000~~chr21:44025000-44050000,
chr21:43350000-43375000~~chr21:44025000-44050000,
chr21:43925000-43950000~~chr21:44025000-44050000,
chr21:44025000-44050000~~chr21:44250000-44275000,
chr21:44025000-44050000~~chr21:44275000-44300000,
chr21:44025000-44050000~~chr21:44300000-44325000,
chr21:44025000-44050000~~chr21:44450000-44475000,
chr21:5125000-5150000~~chr21:44025000-44050000,