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Basic information

CohesinDB ID: CDBP00420882

Locus: chr21-44048020-44048763

Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT

Cell type: K-562, Fibroblast, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: SA1,SA2

CTCF binding site: CTCF CTCF motif: True

Genomic location: TSS,TES

3D genome

TAD boundary: non-Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 62% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "5_TxWk": 52%, "4_Tx": 37%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, ZNF207, POU5F1, MYCN, ID3, ZFX, ZNF600, NME2, ZBTB17, ZBTB48, WT1, DUX4, XBP1, DDX5, TRIM22, HDGF, ETS1, MYC, RUNX2, ATF3, SP140, ZNF189, PAX5, ZSCAN4, TP63, SUPT5H, TP53, OCA2, CTCF, RBM22, AR, IRF1, MAZ, NCOR2, STAG1, AHR

Target gene symbol (double-evidenced CRMs): AGPAT3,LRRC3,PKNOX1,TRAPPC10,PFKL,DNMT3L,CFAP410

Function elements

Human SNPs: .

Number of somatic mutations (coding): 4

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000160199, ENSG00000160216, ENSG00000160218, ENSG00000142182, ENSG00000141959, ENSG00000160226, ENSG00000160233,

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Deatailed information for cohesin site CDBP00420882