- Basic information
- CohesinDB ID: CDBP00420894
- Locus: chr21-44070382-44070916
-
Data sourse: GSE111913, ENCSR153HNT, GSE86191
-
Cell type: K-562, RT-112, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
62% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"4_Tx": 49%,
"5_TxWk": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, POU2F2, ZNF496, MYCN, PAF1, ZFX, ZNF600, NME2, WT1, ZBTB48, FOXA1, LEO1, YY1, RELA, HDGF, MYC, SP140, GRHL3, CHD1, ZNF143, SUPT5H, DNMT3B, AGO2, SCRT2, EZH2, ESR1, OCA2, ZNF334, CTCF, RBM22, AR, ZNF257, SSRP1, HNRNPLL, CLOCK, MAZ, ZNF554, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): PKNOX1,GATD3A,UBE2G2,AGPAT3,TSPEAR,TRPM2,DNMT3L,PTTG1IP,TRAPPC10,CFAP410,PFKL,RRP1,SUMO3,LRRC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000160199,
ENSG00000160214,
ENSG00000160216,
ENSG00000160218,
ENSG00000160221,
ENSG00000142182,
ENSG00000141959,
ENSG00000160226,
ENSG00000142185,
ENSG00000160233,
ENSG00000175894,
ENSG00000184787,
ENSG00000184900,
ENSG00000183255,
- Related loop:
chr21:43000000-43025000~~chr21:44050000-44075000,
chr21:43000000-43025000~~chr21:44075000-44100000,
chr21:43025000-43050000~~chr21:44075000-44100000,
chr21:43175000-43200000~~chr21:44050000-44075000,
chr21:43175000-43200000~~chr21:44075000-44100000,
chr21:43325000-43350000~~chr21:44050000-44075000,
chr21:43350000-43375000~~chr21:44050000-44075000,
chr21:43800000-43825000~~chr21:44050000-44075000,
chr21:43800000-43825000~~chr21:44075000-44100000,
chr21:43825000-43850000~~chr21:44075000-44100000,
chr21:43850000-43875000~~chr21:44075000-44100000,
chr21:43950000-43975000~~chr21:44050000-44075000,
chr21:43975000-44000000~~chr21:44075000-44100000,
chr21:44011649-44014659~~chr21:44065052-44066225,
chr21:44050000-44075000~~chr21:44175000-44200000,
chr21:44050000-44075000~~chr21:44250000-44275000,
chr21:44050000-44075000~~chr21:44275000-44300000,
chr21:44050000-44075000~~chr21:44300000-44325000,
chr21:44050000-44075000~~chr21:44425000-44450000,
chr21:44050000-44075000~~chr21:44450000-44475000,
chr21:44050000-44075000~~chr21:44475000-44500000,
chr21:44050000-44075000~~chr21:44800000-44825000,
chr21:44050000-44075000~~chr21:44850000-44875000,
chr21:44075000-44100000~~chr21:44175000-44200000,
chr21:44075000-44100000~~chr21:44250000-44275000,
chr21:44075000-44100000~~chr21:44275000-44300000,
chr21:44075000-44100000~~chr21:44300000-44325000,
chr21:44075000-44100000~~chr21:44325000-44350000,
chr21:44075000-44100000~~chr21:44425000-44450000,
chr21:44075000-44100000~~chr21:44450000-44475000,
chr21:44075000-44100000~~chr21:44475000-44500000,
chr21:44075000-44100000~~chr21:44725000-44750000,
chr21:44075000-44100000~~chr21:44775000-44800000,
chr21:44075000-44100000~~chr21:44800000-44825000,
chr21:44075000-44100000~~chr21:44850000-44875000,
chr21:44075000-44100000~~chr21:44875000-44900000,
chr21:44075000-44100000~~chr21:45075000-45100000,
chr21:44075000-44100000~~chr21:45100000-45125000,
chr21:44075000-44100000~~chr21:45125000-45150000,
chr21:44075000-44100000~~chr21:45250000-45275000,
chr21:44075000-44100000~~chr21:45275000-45300000,
chr21:44075000-44100000~~chr21:45375000-45400000,
chr21:44075000-44100000~~chr21:45450000-45475000,
chr21:44075000-44100000~~chr21:46175000-46200000,
chr21:5125000-5150000~~chr21:44050000-44075000,
chr21:5125000-5150000~~chr21:44075000-44100000,
chr21:5150000-5175000~~chr21:44075000-44100000,